RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 MCM7P33993 719 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 CAP2P40123 477 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 UBA7P41226 1012 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 PPP1R2P41236 205 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 SARSP49591 514 aaKnown RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 AMPD3Q01432 767 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 ATP2B2Q01814 1243 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 KLRC3Q07444 240 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 POU4F2Q12837 409 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 SEPT2Q15019 361 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 DBN1Q16643 649 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 LONRF3Q496Y0 759 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 TPRNQ4KMQ1 711 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 EARS2Q5JPH6 523 aaKnown RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 DCAF15Q66K64 600 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 HOMER1Q86YM7 354 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 APOBEC3FQ8IUX4 373 aaKnown RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 LPAR1Q92633 364 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 CCDC47Q96A33 483 aaKnown RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 ZNF837Q96EG3 531 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-239ENST00000545694 CLIC6Q96NY7 704 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 LRRC27Q9C0I9 530 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 PSTPIP2Q9H939 334 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 RABGAP1Q9Y3P9 1069 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 COL4A5P29400 1685 aa6.99□□□□□ -1.29
SYNE1-239ENST00000545694 CNTNAP1P78357 1384 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 CYP3A7-CYP3A51PA0A087WV96 503 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 VWA3AA6NCI4 1184 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 TCP10L2B9ZVM9 353 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 H7C1D1 291 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 PIK3CDO00329 1044 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 TBX3O15119 743 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 CTNND1O60716 968 aaKnown RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 NDUFB10O96000 172 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 GH2P01242 217 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 FBXO45P0C2W1 286 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 CYP3A7P24462 503 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 STAT2P52630 851 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 CACNB3P54284 484 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 CDC37Q16543 378 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 INF2Q27J81 1249 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 SYDE2Q5VT97 1194 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 PLA2G4DQ86XP0 818 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 SCARF2Q96GP6 870 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 PCMTD1Q96MG8 357 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 GAS2L1Q99501 681 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 TRIM5Q9C035 493 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 UBA5Q9GZZ9 404 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 EHMT1Q9H9B1 1298 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 VEZTQ9HBM0 779 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 VAT1LQ9HCJ6 419 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 MAP3K20Q9NYL2 800 aaKnown RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 IMPACTQ9P2X3 320 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 FEM1BQ9UK73 627 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 ZBTB21Q9ULJ3 1066 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 MTMR7Q9Y216 660 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 ZKSCAN5Q9Y2L8 839 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 PCDHA5Q9Y5H7 936 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 PCDHA1Q9Y5I3 950 aa6.98□□□□□ -1.29
SYNE1-239ENST00000545694 FRMPD2Q68DX3 1309 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-239ENST00000545694 NRDCO43847 1150 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 CCNT1O60563 726 aaKnown RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 PRKCSHP14314 528 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 VEGFAP15692 232 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 LMNB1P20700 586 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 ZNF75DP51815 510 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 USP14P54578 494 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 GSDMDP57764 484 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 MYL5Q02045 173 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 MORC3Q14149 939 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 DOCK1Q14185 1865 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 KCNB1Q14721 858 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 R3HDM1Q15032 1099 aaKnown RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 CALCRLQ16602 461 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 QRICH1Q2TAL8 776 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 LETM2Q2VYF4 491 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 TMEM259Q4ZIN3 620 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 RRAGBQ5VZM2 374 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 KCTD1Q719H9 257 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 LUZP1Q86V48 1076 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 FBXO11Q86XK2 927 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 SIAH1Q8IUQ4 282 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 DHX40Q8IX18 779 aaKnown RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 SLFN12Q8IYM2 578 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 IGSF22Q8N9C0 903 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 ENOX1Q8TC92 643 aaKnown RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 TBCKQ8TEA7 893 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 PIBF1Q8WXW3 757 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 GTPBP3Q969Y2 492 aaKnown RBP6.97□□□□□ -1.29
SYNE1-239ENST00000545694 CALML4Q96GE6 196 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 MBOAT7Q96N66 472 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 DEFB129Q9H1M3 183 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 VCPKMTQ9H867 229 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 SPON1Q9HCB6 807 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 DISC1Q9NRI5 854 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 PGAP2Q9UHJ9 254 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 SERTAD1Q9UHV2 236 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 BCS1LQ9Y276 419 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 PCDHAC2Q9Y5I4 1007 aa6.97□□□□□ -1.29
SYNE1-239ENST00000545694 PITPNM2Q9BZ72 1349 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms