RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TGFB3P10600 412 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 UBA1P22314 1058 aaKnown RBP14.95□□□□□ -0.02
USP28-212ENST00000544750 IRS1P35568 1242 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 PGM5Q15124 567 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 IL31RAQ8NI17 732 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 SEPT8Q92599 483 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 GPKOWQ92917 476 aaPredicted RBP eCLIP14.95□□□□□ -0.02
USP28-212ENST00000544750 ATP6V0A1Q93050 837 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 SPATA33Q96N06 139 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 YME1L1Q96TA2 773 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 RNPEPQ9H4A4 650 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 BCAS3Q9H6U6 928 aa14.95□□□□□ -0.02
USP28-212ENST00000544750 MAP3K20Q9NYL2 800 aaKnown RBP14.95□□□□□ -0.02
USP28-212ENST00000544750 USP34Q70CQ2 3546 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 C17orf102A2RUQ5 167 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 H3BRB1 525 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 PPP1R11O60927 126 aaPredicted RBP14.94□□□□□ -0.02
USP28-212ENST00000544750 KDM4AO75164 1064 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 SMIM10L2AP0DMW4 78 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 SMIM10L2BP0DMW5 78 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 ADAM17P78536 824 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 SMAD2Q15796 467 aaKnown RBP14.94□□□□□ -0.02
USP28-212ENST00000544750 CCDC178Q5BJE1 867 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 HFE2Q6ZVN8 426 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 RPAINQ86UA6 219 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 IQCA1Q86XH1 822 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 ENAHQ8N8S7 591 aaPredicted RBP14.94□□□□□ -0.02
USP28-212ENST00000544750 AMNQ9BXJ7 453 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 TUT1Q9H6E5 874 aaKnown RBP14.94□□□□□ -0.02
USP28-212ENST00000544750 KAT14Q9H8E8 782 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 RC3H2Q9HBD1 1191 aaKnown RBP14.94□□□□□ -0.02
USP28-212ENST00000544750 CLDND1Q9NY35 253 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 FAM50BQ9Y247 325 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 KMT2EQ8IZD2 1858 aa14.94□□□□□ -0.02
USP28-212ENST00000544750 SORBS3O60504 671 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 UPP2O95045 317 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 LGALS2P05162 132 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 PARP1P09874 1014 aaKnown RBP14.93□□□□□ -0.02
USP28-212ENST00000544750 MYCLP12524 364 aaPredicted RBP14.93□□□□□ -0.02
USP28-212ENST00000544750 DLX2Q07687 328 aaPredicted RBP14.93□□□□□ -0.02
USP28-212ENST00000544750 ANKRD45Q5TZF3 282 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 STAG2Q8N3U4 1231 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 SAMD3Q8N6K7 520 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 ZSCAN10Q96SZ4 725 aaPredicted RBP14.93□□□□□ -0.02
USP28-212ENST00000544750 VAT1LQ9HCJ6 419 aa14.93□□□□□ -0.02
USP28-212ENST00000544750 B4E1Z4 1266 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 ZNF213O14771 459 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 MBTPS2O43462 519 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 NCK2O43639 380 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 RB1P06400 928 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 CTSHP09668 335 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 HYAL1Q12794 435 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 HERC4Q5GLZ8 1057 aaPredicted RBP14.92□□□□□ -0.02
USP28-212ENST00000544750 FAM26DQ5JW98 314 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 APBB2Q92870 758 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 IFIH1Q9BYX4 1025 aaKnown RBP14.92□□□□□ -0.02
USP28-212ENST00000544750 LMAN2LQ9H0V9 348 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 ZSWIM5Q9P217 1185 aa14.92□□□□□ -0.02
USP28-212ENST00000544750 GRM6O15303 877 aa14.91□□□□□ -0.02
USP28-212ENST00000544750 HOXA13P31271 388 aaPredicted RBP14.91□□□□□ -0.02
USP28-212ENST00000544750 BMPR1AP36894 532 aa14.91□□□□□ -0.02
USP28-212ENST00000544750 SLC35G1Q2M3R5 365 aa14.91□□□□□ -0.02
USP28-212ENST00000544750 CLP1Q92989 425 aaKnown RBP14.91□□□□□ -0.02
USP28-212ENST00000544750 ZFP91Q96JP5 570 aaPredicted RBP14.91□□□□□ -0.02
USP28-212ENST00000544750 UPF3BQ9BZI7 483 aaKnown RBP14.91□□□□□ -0.02
USP28-212ENST00000544750 MLXIPQ9HAP2 919 aa14.91□□□□□ -0.02
USP28-212ENST00000544750 PLXNA4Q9HCM2 1894 aa14.91□□□□□ -0.02
USP28-212ENST00000544750 ZDBF2Q9HCK1 2354 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 ZBTB5O15062 677 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 DHX16O60231 1041 aaKnown RBP14.9□□□□□ -0.02
USP28-212ENST00000544750 TBX10O75333 385 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 ICAM3P32942 547 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 MRPS9P82933 396 aaKnown RBP14.9□□□□□ -0.02
USP28-212ENST00000544750 SEMA3FQ13275 785 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 CAMK1Q14012 370 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 EP400NLQ6ZTU2 488 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 FIBCD1Q8N539 461 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 IL17RAQ96F46 866 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 USP26Q9BXU7 913 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 SETD4Q9NVD3 440 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 MAD2L2Q9UI95 211 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 MUTYHQ9UIF7 546 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 SUPT16HQ9Y5B9 1047 aaKnown RBP14.9□□□□□ -0.02
USP28-212ENST00000544750 PCDHA1Q9Y5I3 950 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 FRMPD4Q14CM0 1322 aa14.9□□□□□ -0.02
USP28-212ENST00000544750 PALM3A6NDB9 673 aaPredicted RBP14.89□□□□□ -0.03
USP28-212ENST00000544750 CHRNA1P02708 482 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 SDSP20132 328 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 CCND2P30279 289 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 CTNNB1P35222 781 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 GTF2F1P35269 517 aaKnown RBP eCLIP14.89□□□□□ -0.03
USP28-212ENST00000544750 MFAP1P55081 439 aaKnown RBP14.89□□□□□ -0.03
USP28-212ENST00000544750 SMAD4Q13485 552 aaKnown RBP14.89□□□□□ -0.03
USP28-212ENST00000544750 SEC23AQ15436 765 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 BMP8AQ7Z5Y6 402 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 RNF135Q8IUD6 432 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 ZNF689Q96CS4 500 aaPredicted RBP14.89□□□□□ -0.03
USP28-212ENST00000544750 MFSD14AQ96MC6 490 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 INPP4AQ96PE3 977 aaPredicted RBP14.89□□□□□ -0.03
USP28-212ENST00000544750 PHOX2BQ99453 314 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms