RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CYFIP1Q7L576 1253 aa15.09■□□□□ 0.01
RTN3-213ENST00000543552 SERINC5Q86VE9 423 aa15.09■□□□□ 0.01
RTN3-213ENST00000543552 SGMS1Q86VZ5 419 aa15.09■□□□□ 0.01
RTN3-213ENST00000543552 SRBD1Q8N5C6 995 aaKnown RBP15.09■□□□□ 0.01
RTN3-213ENST00000543552 PPM1EQ8WY54 764 aa15.09■□□□□ 0.01
RTN3-213ENST00000543552 ZBED2Q9BTP6 218 aa15.09■□□□□ 0.01
RTN3-213ENST00000543552 TRIP12Q14669 1992 aaPredicted RBP15.09■□□□□ 0.01
RTN3-213ENST00000543552 MEIS2O14770 477 aa15.08■□□□□ 0
RTN3-213ENST00000543552 KRT32Q14532 448 aa15.08■□□□□ 0
RTN3-213ENST00000543552 TMTC3Q6ZXV5 915 aa15.08■□□□□ 0
RTN3-213ENST00000543552 MICU3Q86XE3 530 aa15.08■□□□□ 0
RTN3-213ENST00000543552 FANCBQ8NB91 859 aa15.08■□□□□ 0
RTN3-213ENST00000543552 IL27Q8NEV9 243 aa15.08■□□□□ 0
RTN3-213ENST00000543552 GPKOWQ92917 476 aaPredicted RBP eCLIP15.08■□□□□ 0
RTN3-213ENST00000543552 ATP6V0A1Q93050 837 aa15.08■□□□□ 0
RTN3-213ENST00000543552 GPRASP2Q96D09 838 aa15.08■□□□□ 0
RTN3-213ENST00000543552 ZFP91Q96JP5 570 aaPredicted RBP15.08■□□□□ 0
RTN3-213ENST00000543552 RBM28Q9NW13 759 aaKnown RBP15.08■□□□□ 0
RTN3-213ENST00000543552 RTEL1Q9NZ71 1219 aa15.08■□□□□ 0
RTN3-213ENST00000543552 TTC28Q96AY4 2481 aa15.07■□□□□ 0
RTN3-213ENST00000543552 NBNO60934 754 aa15.07■□□□□ 0
RTN3-213ENST00000543552 SMIM10L2AP0DMW4 78 aa15.07■□□□□ 0
RTN3-213ENST00000543552 SMIM10L2BP0DMW5 78 aa15.07■□□□□ 0
RTN3-213ENST00000543552 RXRAP19793 462 aa15.07■□□□□ 0
RTN3-213ENST00000543552 THPOP40225 353 aa15.07■□□□□ 0
RTN3-213ENST00000543552 TRIM71Q2Q1W2 868 aaKnown RBP15.07■□□□□ 0
RTN3-213ENST00000543552 ZNF618Q5T7W0 954 aa15.07■□□□□ 0
RTN3-213ENST00000543552 HEATR3Q7Z4Q2 680 aa15.07■□□□□ 0
RTN3-213ENST00000543552 NEK1Q96PY6 1258 aa15.07■□□□□ 0
RTN3-213ENST00000543552 GPR20Q99678 358 aa15.07■□□□□ 0
RTN3-213ENST00000543552 MUC3AQ02505 3323 aa15.06■□□□□ 0
RTN3-213ENST00000543552 RSPH10B2B2RC85 870 aa15.06■□□□□ 0
RTN3-213ENST00000543552 CDC45O75419 566 aa15.06■□□□□ 0
RTN3-213ENST00000543552 LGR5O75473 907 aa15.06■□□□□ 0
RTN3-213ENST00000543552 HMGB1P09429 215 aaKnown RBP15.06■□□□□ 0
RTN3-213ENST00000543552 RSPH10BP0C881 870 aa15.06■□□□□ 0
RTN3-213ENST00000543552 HOXC8P31273 242 aa15.06■□□□□ 0
RTN3-213ENST00000543552 MRPS5P82675 430 aaKnown RBP15.06■□□□□ 0
RTN3-213ENST00000543552 TAP1Q03518 808 aa15.06■□□□□ 0
RTN3-213ENST00000543552 SEMA3FQ13275 785 aa15.06■□□□□ 0
RTN3-213ENST00000543552 CCDC85BQ15834 202 aaPredicted RBP15.06■□□□□ 0
RTN3-213ENST00000543552 PPP1R18Q6NYC8 613 aa15.06■□□□□ 0
RTN3-213ENST00000543552 APOA5Q6Q788 366 aa15.06■□□□□ 0
RTN3-213ENST00000543552 MICALL1Q8N3F8 863 aa15.06■□□□□ 0
RTN3-213ENST00000543552 TET1Q8NFU7 2136 aa15.06■□□□□ 0
RTN3-213ENST00000543552 ARNTL2Q8WYA1 636 aa15.06■□□□□ 0
RTN3-213ENST00000543552 RAD9AQ99638 391 aa15.06■□□□□ 0
RTN3-213ENST00000543552 LRRC2Q9BYS8 371 aa15.06■□□□□ 0
RTN3-213ENST00000543552 XIRP2A4UGR9 3374 aa15.06■□□□□ 0
RTN3-213ENST00000543552 hCG_1984214I3L0E3 225 aa15.05■□□□□ -0
RTN3-213ENST00000543552 MAFGO15525 162 aa15.05■□□□□ -0
RTN3-213ENST00000543552 ZBTB43O43298 467 aa15.05■□□□□ -0
RTN3-213ENST00000543552 GJB5O95377 273 aa15.05■□□□□ -0
RTN3-213ENST00000543552 POU3F3P20264 500 aaPredicted RBP15.05■□□□□ -0
RTN3-213ENST00000543552 ZNF200P98182 395 aaPredicted RBP15.05■□□□□ -0
RTN3-213ENST00000543552 SP4Q02446 784 aa15.05■□□□□ -0
RTN3-213ENST00000543552 MTMR1Q13613 665 aa15.05■□□□□ -0
RTN3-213ENST00000543552 GPNMBQ14956 572 aa15.05■□□□□ -0
RTN3-213ENST00000543552 AAK1Q2M2I8 961 aa15.05■□□□□ -0
RTN3-213ENST00000543552 DHX32Q7L7V1 743 aaKnown RBP15.05■□□□□ -0
RTN3-213ENST00000543552 CMTR1Q8N1G2 835 aaKnown RBP15.05■□□□□ -0
RTN3-213ENST00000543552 CCDC82Q8N4S0 544 aa15.05■□□□□ -0
RTN3-213ENST00000543552 ZNF713Q8N859 430 aaPredicted RBP15.05■□□□□ -0
RTN3-213ENST00000543552 GLT8D2Q9H1C3 349 aa15.05■□□□□ -0
RTN3-213ENST00000543552 NRCAMQ92823 1304 aa15.04■□□□□ -0
RTN3-213ENST00000543552 AMHP03971 560 aa15.04■□□□□ -0
RTN3-213ENST00000543552 RCAN1P53805 252 aa15.04■□□□□ -0
RTN3-213ENST00000543552 FGD1P98174 961 aa15.04■□□□□ -0
RTN3-213ENST00000543552 RTN1Q16799 776 aa15.04■□□□□ -0
RTN3-213ENST00000543552 TSGA10IPQ3SY00 556 aa15.04■□□□□ -0
RTN3-213ENST00000543552 UTP14CQ5TAP6 766 aaKnown RBP15.04■□□□□ -0
RTN3-213ENST00000543552 TRAF7Q6Q0C0 670 aa15.04■□□□□ -0
RTN3-213ENST00000543552 RAB11FIP4Q86YS3 637 aa15.04■□□□□ -0
RTN3-213ENST00000543552 SEPT8Q92599 483 aa15.04■□□□□ -0
RTN3-213ENST00000543552 WNT8BQ93098 351 aa15.04■□□□□ -0
RTN3-213ENST00000543552 ASB2Q96Q27 587 aa15.04■□□□□ -0
RTN3-213ENST00000543552 RNPEPQ9H4A4 650 aa15.04■□□□□ -0
RTN3-213ENST00000543552 CNTNAP5Q8WYK1 1306 aa15.03■□□□□ -0
RTN3-213ENST00000543552 hCG_1642624A0A1W2PR95 340 aa15.03■□□□□ -0
RTN3-213ENST00000543552 TREHO43280 583 aa15.03■□□□□ -0
RTN3-213ENST00000543552 FOSP01100 380 aaPredicted RBP15.03■□□□□ -0
RTN3-213ENST00000543552 RPLP2P05387 115 aaKnown RBP15.03■□□□□ -0
RTN3-213ENST00000543552 TCF7P36402 384 aaPredicted RBP15.03■□□□□ -0
RTN3-213ENST00000543552 NAPAP54920 295 aa15.03■□□□□ -0
RTN3-213ENST00000543552 DEFB103AP81534 67 aa15.03■□□□□ -0
RTN3-213ENST00000543552 ARHGAP4P98171 946 aa15.03■□□□□ -0
RTN3-213ENST00000543552 HIC1Q14526 733 aa15.03■□□□□ -0
RTN3-213ENST00000543552 MBTPS1Q14703 1052 aa15.03■□□□□ -0
RTN3-213ENST00000543552 SKIV2LQ15477 1246 aaKnown RBP15.03■□□□□ -0
RTN3-213ENST00000543552 UBE2SQ16763 222 aa15.03■□□□□ -0
RTN3-213ENST00000543552 TAF2Q6P1X5 1199 aa15.03■□□□□ -0
RTN3-213ENST00000543552 TRIM50Q86XT4 487 aa15.03■□□□□ -0
RTN3-213ENST00000543552 APBB2Q92870 758 aa15.03■□□□□ -0
RTN3-213ENST00000543552 TNPO1Q92973 898 aaKnown RBP15.03■□□□□ -0
RTN3-213ENST00000543552 BCAS3Q9H6U6 928 aa15.03■□□□□ -0
RTN3-213ENST00000543552 CERS4Q9HA82 394 aa15.03■□□□□ -0
RTN3-213ENST00000543552 SETD4Q9NVD3 440 aa15.03■□□□□ -0
RTN3-213ENST00000543552 ERAP1Q9NZ08 941 aa15.03■□□□□ -0
RTN3-213ENST00000543552 PCDHA6Q9UN73 950 aa15.03■□□□□ -0
RTN3-213ENST00000543552 PCDHA8Q9Y5H6 950 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms