RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	PALD1	Q9ULE6	856 aa		4.66	□□□□□ -1.66
USP28-210	ENST00000542033	ZNF652	Q9Y2D9	606 aa		4.66	□□□□□ -1.66
USP28-210	ENST00000542033	CD2AP	Q9Y5K6	639 aa		4.66	□□□□□ -1.66
USP28-210	ENST00000542033	SGSM2	O43147	1006 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	OPA1	O60313	960 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	RFPL3	O75679	317 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	COL6A2	P12110	1019 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	LIMS1	P48059	325 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	DNM2	P50570	870 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	FOXO4	P98177	505 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	CACNB2	Q08289	660 aa	Predicted RBP	4.65	□□□□□ -1.67
USP28-210	ENST00000542033	PABPC4	Q13310	644 aa	Known RBP eCLIP	4.65	□□□□□ -1.67
USP28-210	ENST00000542033	CYP4F22	Q6NT55	531 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	EP400NL	Q6ZTU2	488 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	OTOP3	Q7RTS5	596 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	B3GNT8	Q7Z7M8	397 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	PCDH19	Q8TAB3	1148 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	PHOSPHO1	Q8TCT1	267 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	DACT3	Q96B18	629 aa	Predicted RBP	4.65	□□□□□ -1.67
USP28-210	ENST00000542033	CLUHP3	Q96NS8	147 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	FEZ1	Q99689	392 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	KRTAP4-11	Q9BYQ6	195 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	SLK	Q9H2G2	1235 aa	Predicted RBP	4.65	□□□□□ -1.67
USP28-210	ENST00000542033	BCAS3	Q9H6U6	928 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	TRIM39	Q9HCM9	518 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	SLC6A20	Q9NP91	592 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	MYOT	Q9UBF9	498 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	PCDHB4	Q9Y5E5	795 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	PMF1-BGLAP	U3KQ54	211 aa		4.65	□□□□□ -1.67
USP28-210	ENST00000542033	TCRBV16S1A1N1	A0A5B0	115 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033		B4E1Z4	1266 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	WNT9A	O14904	365 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	CYP2C8	P10632	490 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	PYGM	P11217	842 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	ATF2	P15336	505 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	HSD3B2	P26439	372 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	IGFALS	P35858	605 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	FLT3	P36888	993 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	CRY1	Q16526	586 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	C21orf62-AS1	Q17RA5	79 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	TKFC	Q3LXA3	575 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	EMC4	Q5J8M3	183 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	FGD2	Q7Z6J4	655 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	MIB1	Q86YT6	1006 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	TRIM48	Q8IWZ4	208 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	FAM126B	Q8IXS8	530 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	SCLY	Q96I15	445 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	SMOC1	Q9H4F8	434 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	PLAA	Q9Y263	795 aa		4.64	□□□□□ -1.67
USP28-210	ENST00000542033	CCDC66	A2RUB6	948 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	SLC27A2	O14975	620 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	SMARCA5	O60264	1052 aa	Predicted RBP	4.63	□□□□□ -1.67
USP28-210	ENST00000542033	TADA3	O75528	432 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	ASL	P04424	464 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	KRT15	P19012	456 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	MC3R	P41968	323 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	GPR19	Q15760	415 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	PLEKHG4	Q58EX7	1191 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	SPOCD1	Q6ZMY3	1216 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	ARHGAP36	Q6ZRI8	547 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	LCNL1	Q6ZST4	164 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	C16orf59	Q7L2K0	433 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	DDX53	Q86TM3	631 aa	Known RBP	4.63	□□□□□ -1.67
USP28-210	ENST00000542033	NIM1K	Q8IY84	436 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	LINC01356	Q8N9X3	169 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	SMARCC2	Q8TAQ2	1214 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	NINJ1	Q92982	152 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	4.63	□□□□□ -1.67
USP28-210	ENST00000542033	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.63	□□□□□ -1.67
USP28-210	ENST00000542033	DSE	Q9UL01	958 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	PLA2G2D	Q9UNK4	145 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	COQ6	Q9Y2Z9	468 aa		4.63	□□□□□ -1.67
USP28-210	ENST00000542033	TNPO3	Q9Y5L0	923 aa	Known RBP	4.63	□□□□□ -1.67
USP28-210	ENST00000542033	TCRBV5S2	A0A599	114 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	NKRF	O15226	690 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	DNAJC8	O75937	253 aa	Predicted RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	NPTXR	O95502	500 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	PDE6A	P16499	860 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	NKX3-2	P78367	333 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	CD300LD	Q6UXZ3	194 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	UBE2R2	Q712K3	238 aa	Predicted RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	SP8	Q8IXZ3	490 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	DHX37	Q8IY37	1157 aa	Known RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	NLGN4X	Q8N0W4	816 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	CISD2	Q8N5K1	135 aa	Known RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	IGSF22	Q8N9C0	903 aa		4.62	□□□□□ -1.67
USP28-210	ENST00000542033	UHMK1	Q8TAS1	419 aa	Known RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	CELF4	Q9BZC1	486 aa	Known RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	INTS7	Q9NVH2	962 aa	Known RBP	4.62	□□□□□ -1.67
USP28-210	ENST00000542033	SASH1	O94885	1247 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	CKM	P06732	381 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	C8B	P07358	591 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	SDS	P20132	328 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	CDK11B	P21127	795 aa	Known RBP	4.61	□□□□□ -1.67
USP28-210	ENST00000542033	NEK4	P51957	841 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	HTRA3	P83110	453 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	TUSC3	Q13454	348 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	FBLN7	Q53RD9	439 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	HABP4	Q5JVS0	413 aa	Known RBP	4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms