RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 INPP4AQ96PE3 977 aaPredicted RBP10.58□□□□□ -0.72
DDX55-208ENST00000541259 MTMR9Q96QG7 549 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 NAP1L4Q99733 375 aaKnown RBP10.58□□□□□ -0.72
DDX55-208ENST00000541259 APBA2Q99767 749 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 TINF2Q9BSI4 451 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 BCAS3Q9H6U6 928 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 KCNMB3Q9NPA1 279 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 PDGFCQ9NRA1 345 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 SLC5A4Q9NY91 659 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 PKD2L1Q9P0L9 805 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 SRRDQ9UH36 339 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 PCDHGA4Q9Y5G9 962 aa10.58□□□□□ -0.72
DDX55-208ENST00000541259 FOXN1O15353 648 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 ATP9AO75110 1047 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 YEATS4O95619 227 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 CYP2C19P33261 490 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 TXKP42681 527 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 ORC2Q13416 577 aaPredicted RBP10.57□□□□□ -0.72
DDX55-208ENST00000541259 CALCRLQ16602 461 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 TMEM63BQ5T3F8 832 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 NIPA1Q7RTP0 329 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 NLRX1Q86UT6 975 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 SCAND2PQ9GZW5 306 aaPredicted RBP10.57□□□□□ -0.72
DDX55-208ENST00000541259 KATNBL1Q9H079 304 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 AGO4Q9HCK5 861 aaKnown RBP10.57□□□□□ -0.72
DDX55-208ENST00000541259 KCNH7Q9NS40 1196 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.57□□□□□ -0.72
DDX55-208ENST00000541259 FBXO2Q9UK22 296 aaPredicted RBP10.57□□□□□ -0.72
DDX55-208ENST00000541259 PCDHA7Q9UN72 937 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 CEP131Q9UPN4 1083 aa10.57□□□□□ -0.72
DDX55-208ENST00000541259 LOC102724159A0A0B4J2E5 919 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 B4DLN1 442 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 SPATA31C2B4DYI2 1134 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 SORBS3O60504 671 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 GADD45BO75293 160 aaPredicted RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 PRPF40AO75400 957 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 STAM2O75886 525 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 ARIH2O95376 493 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 OR52Z1P0C646 297 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 HSPA1AP0DMV8 641 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 HSPA1BP0DMV9 641 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 HSPA8P11142 646 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 XRCC5P13010 732 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 ELNP15502 786 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 PTGS1P23219 599 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 HOXD10P28358 340 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 SP2Q02086 613 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 TRIM32Q13049 653 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 ITGB3BPQ13352 177 aaPredicted RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 MTMR1Q13613 665 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 PWP2Q15269 919 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 OLFML2BQ68BL8 750 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 TAPT1Q6NXT6 567 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 OTOP1Q7RTM1 612 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 TRIB2Q92519 343 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 SLC5A5Q92911 643 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 GPRASP2Q96D09 838 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 GBP4Q96PP9 640 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 MPHOSPH6Q99547 160 aaKnown RBP10.56□□□□□ -0.72
DDX55-208ENST00000541259 TELO2Q9Y4R8 837 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 TRIM17Q9Y577 477 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 SYNGAP1Q96PV0 1343 aa10.56□□□□□ -0.72
DDX55-208ENST00000541259 VWA3AA6NCI4 1184 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 GRXCR2A6NFK2 248 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 IPO5O00410 1097 aaKnown RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 LAD1O00515 517 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 TBX3O15119 743 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 DHX15O43143 795 aaKnown RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 ADCY3O60266 1144 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 MARCH6O60337 910 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 PPP6R2O75170 966 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 BMP15O95972 392 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 GNRH1P01148 92 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 ZNF865P0CJ78 1059 aaPredicted RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 ICAM3P32942 547 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 MCM4P33991 863 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 MLLT3P42568 568 aaPredicted RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 TECP42680 631 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 ME1P48163 572 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 SETQ01105 290 aaPredicted RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 ACVR2BQ13705 512 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 LY6KQ17RY6 165 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 GNPTABQ3T906 1256 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 SPECC1Q5M775 1068 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 AXDND1Q5T1B0 1012 aaPredicted RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 DTHD1Q6ZMT9 781 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 MSL3Q8N5Y2 521 aaKnown RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 TRPV1Q8NER1 839 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 KCNG4Q8TDN1 519 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 COPS5Q92905 334 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 ZNF577Q9BSK1 485 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 CSRNP2Q9H175 543 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 LMBRD1Q9NUN5 540 aa10.55□□□□□ -0.72
DDX55-208ENST00000541259 SRPRBQ9Y5M8 271 aaKnown RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 MORC2Q9Y6X9 1032 aaPredicted RBP10.55□□□□□ -0.72
DDX55-208ENST00000541259 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 RBM47A0AV96 593 aaKnown RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 PP2D1A8MPX8 630 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 DDX39AO00148 427 aaKnown RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 PSMD10O75832 226 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms