RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 CCDC22O60826 627 aa9.44□□□□□ -0.9
YBX3-208ENST00000540447 OCM2P0CE71 109 aa9.44□□□□□ -0.9
YBX3-208ENST00000540447 OCMP0CE72 109 aaPredicted RBP9.44□□□□□ -0.9
YBX3-208ENST00000540447 ERFP50548 548 aa9.44□□□□□ -0.9
YBX3-208ENST00000540447 ZNF692Q9BU19 519 aaPredicted RBP9.44□□□□□ -0.9
YBX3-208ENST00000540447 ATAD3AQ9NVI7 634 aa9.44□□□□□ -0.9
YBX3-208ENST00000540447 CLIC4Q9Y696 253 aa9.44□□□□□ -0.9
YBX3-208ENST00000540447 CASKIN1Q8WXD9 1431 aa9.44□□□□□ -0.9
YBX3-208ENST00000540447 GSTA4O15217 222 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 BRAFP15056 766 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 ATP1A4Q13733 1029 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 PLD3Q8IV08 490 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 SRRM1Q8IYB3 904 aaKnown RBP9.43□□□□□ -0.9
YBX3-208ENST00000540447 STKLD1Q8NE28 680 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 EZH1Q92800 747 aaPredicted RBP9.43□□□□□ -0.9
YBX3-208ENST00000540447 XPO6Q96QU8 1125 aaKnown RBP9.43□□□□□ -0.9
YBX3-208ENST00000540447 FUT8Q9BYC5 575 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 CCDC134Q9H6E4 229 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 RTEL1Q9NZ71 1219 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 PKD2L2Q9NZM6 624 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 RWDD3Q9Y3V2 267 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 S100A1P23297 94 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 C8orf58Q8NAV2 365 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 TUBGCP2Q9BSJ2 902 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 KDRP35968 1356 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 KIF24Q5T7B8 1368 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 ESYT3A0FGR9 886 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 ZNF839A8K0R7 811 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 NR1H3Q13133 447 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 ADRM1Q16186 407 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 DYMQ7RTS9 669 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 CARD8Q9Y2G2 431 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.43□□□□□ -0.9
YBX3-208ENST00000540447 CAPN9O14815 690 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 CHN1P15882 459 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 GNA11P29992 359 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 TMPRSS15P98073 1019 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 BFSP1Q12934 665 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 LETM2Q2VYF4 491 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 SGO2Q562F6 1265 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 BSPRYQ5W0U4 402 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 ELMSAN1Q6PJG2 1045 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 STAG2Q8N3U4 1231 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 CDKL2Q92772 493 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 TTC17Q96AE7 1141 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 FAM192AQ9GZU8 254 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 USP40Q9NVE5 1235 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 STX8Q9UNK0 236 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 RCN1Q15293 331 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 TRIP10Q15642 601 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 CLEC17AQ6ZS10 378 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 RNPC3Q96LT9 517 aaKnown RBP9.43□□□□□ -0.9
YBX3-208ENST00000540447 RIOK1Q9BRS2 568 aaKnown RBP9.43□□□□□ -0.9
YBX3-208ENST00000540447 BEGAINQ9BUH8 593 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 CYP4F11Q9HBI6 524 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 SAMSN1Q9NSI8 373 aaKnown RBP9.43□□□□□ -0.9
YBX3-208ENST00000540447 PPME1Q9Y570 386 aa9.43□□□□□ -0.9
YBX3-208ENST00000540447 FAM83GA6ND36 823 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 TULP2O00295 520 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 VCPP55072 806 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 CYP27A1Q02318 531 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 SF3B3Q15393 1217 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 TOM1L2Q6ZVM7 507 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 CENPUQ71F23 418 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 NELFCDQ8IXH7 590 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 EXOC8Q8IYI6 725 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 PROCA1Q8NCQ7 364 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 CLIC6Q96NY7 704 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 FBXL5Q9UKA1 691 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 XPOTO43592 962 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 VAMP4O75379 141 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 ACTN1P12814 892 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 ATF7P17544 494 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 GRIN1Q05586 938 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 C16orf72Q14CZ0 275 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 LRIG3Q6UXM1 1119 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 RNF207Q6ZRF8 634 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 TRIM50Q86XT4 487 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 HDAC11Q96DB2 347 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 PA2G4Q9UQ80 394 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 ASNA1O43681 348 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 S100A9P06702 114 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 KCNA2P16389 499 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 RPS6KA3P51812 740 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 E4F1Q66K89 784 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 ABTB2Q8N961 1025 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 ZSWIM6Q9HCJ5 1215 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 DISP3Q9P2K9 1392 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 M0R3G1 203 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 TTI1O43156 1089 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 GTPBP6O43824 516 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 ATP9AO75110 1047 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 EIF4A3P38919 411 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 ABHD8Q96I13 439 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 TMEM87BQ96K49 555 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 FAM227BQ96M60 508 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 PRPF18Q99633 342 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 DAPK2Q9UIK4 370 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 KPNA4O00629 521 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 TATP17735 454 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms