RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 MRPS9P82933 396 aaKnown RBP13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 HTRA4P83105 476 aaPredicted RBP13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 PLEKHG4Q58EX7 1191 aa13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 CATIPQ7Z7H3 387 aa13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 GPKOWQ92917 476 aaPredicted RBP eCLIP13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 MAP3K14Q99558 947 aa13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 MYH6P13533 1939 aa13.88□□□□□ -0.19
CBX3P4-202ENST00000540428 TRANK1O15050 2925 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 GNAT1P11488 350 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 SMARCA1P28370 1054 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 PTH1RQ03431 593 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 XRRA1Q6P2D8 792 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 SP7Q8TDD2 431 aaPredicted RBP13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 SAMD11Q96NU1 681 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 GPR20Q99678 358 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 SENP7Q9BQF6 1050 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 MTA3Q9BTC8 594 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 RNPEPQ9H4A4 650 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 SENP2Q9HC62 589 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 PTPRSQ13332 1948 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 XIRP2A4UGR9 3374 aa13.87□□□□□ -0.19
CBX3P4-202ENST00000540428 PIK3CDO00329 1044 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 TREHO43280 583 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 DDAH1O94760 285 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 SEMA3FQ13275 785 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 CYFIP1Q7L576 1253 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 MYOCDQ8IZQ8 938 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 IGDCC4Q8TDY8 1250 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 SEPT8Q92599 483 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 APBB2Q92870 758 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 CUL5Q93034 780 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 ZFP91Q96JP5 570 aaPredicted RBP13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 SPZ1Q9BXG8 430 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 ZNF215Q9UL58 517 aaPredicted RBP13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 MTUS1Q9ULD2 1270 aa13.86□□□□□ -0.19
CBX3P4-202ENST00000540428 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 SGSM2O43147 1006 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 KIF5BP33176 963 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 ANTXR2P58335 489 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 ADAM17P78536 824 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 PCNX4Q63HM2 1172 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 FAM117BQ6P1L5 589 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 MB21D2Q8IYB1 491 aaPredicted RBP13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 GIMAP8Q8ND71 665 aaPredicted RBP13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 FBXO22Q8NEZ5 403 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 CTCFLQ8NI51 663 aaPredicted RBP13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 SMARCC2Q8TAQ2 1214 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 MAP4K1Q92918 833 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 TOP1MTQ969P6 601 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 RRP36Q96EU6 259 aaKnown RBP13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 LZTS2Q9BRK4 669 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 BCAS3Q9H6U6 928 aa13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 COL4A4P53420 1690 aaPredicted RBP13.85□□□□□ -0.19
CBX3P4-202ENST00000540428 GNAQP50148 359 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 PTPROQ16827 1216 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 LEXMQ3ZCV2 418 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 FAM26DQ5JW98 314 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 RPAINQ86UA6 219 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 NLRX1Q86UT6 975 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 ZNF654Q8IZM8 581 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 MRPL38Q96DV4 380 aaKnown RBP13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 YTHDC1Q96MU7 727 aaKnown RBP13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 C17orf80Q9BSJ5 609 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 UBE2ZQ9H832 354 aaPredicted RBP13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 SETD4Q9NVD3 440 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 RTEL1Q9NZ71 1219 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 SEC63Q9UGP8 760 aaKnown RBP13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 TAF6LQ9Y6J9 622 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 NRCAMQ92823 1304 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 REV3LO60673 3130 aa13.84□□□□□ -0.19
CBX3P4-202ENST00000540428 TCF20Q9UGU0 1960 aaKnown RBP13.83□□□□□ -0.19
CBX3P4-202ENST00000540428 COL4A6Q14031 1691 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 MEIS2O14770 477 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 CTSHP09668 335 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 EPC2Q52LR7 807 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 TAF2Q6P1X5 1199 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 TMTC2Q8N394 836 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 GPRASP2Q96D09 838 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 CDHR1Q96JP9 859 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 YME1L1Q96TA2 773 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 EPHX3Q9H6B9 360 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 LY9Q9HBG7 655 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 RAPGEFL1Q9UHV5 662 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 ARIH1Q9Y4X5 557 aaPredicted RBP13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 BDP1A6H8Y1 2624 aa13.83□□□□□ -0.2
CBX3P4-202ENST00000540428 MYH7BA7E2Y1 1941 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 H3BNC9 293 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 PLA2G5P39877 138 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 ARHGAP4P98171 946 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 PUS10Q3MIT2 529 aaKnown RBP13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 TIGD5Q53EQ6 642 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 UTP14CQ5TAP6 766 aaKnown RBP13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 USP17L6PQ6QN14 398 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 CASC1Q6TDU7 716 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 TRIM50Q86XT4 487 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 LMBR1Q8WVP7 490 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 PIBF1Q8WXW3 757 aa13.82□□□□□ -0.2
CBX3P4-202ENST00000540428 TMEM87BQ96K49 555 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms