RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TBC1D10CQ8IV04 446 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 FIBCD1Q8N539 461 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 EDAQ92838 391 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 APBB2Q92870 758 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 PDCD2LQ9BRP1 358 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 OSBPL7Q9BZF2 842 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 LMAN2LQ9H0V9 348 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 RNPEPQ9H4A4 650 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 KAT14Q9H8E8 782 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 JMJD4Q9H9V9 463 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 MLXIPQ9HAP2 919 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 VAT1LQ9HCJ6 419 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 MUTYHQ9UIF7 546 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 COL4A6Q14031 1691 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 SALL3Q9BXA9 1300 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 MYO7AQ13402 2215 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 DHX16O60231 1041 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 SMIM10L2AP0DMW4 78 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 SMIM10L2BP0DMW5 78 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 CTNNB1P35222 781 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 BMPR1AP36894 532 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 DLX2Q07687 328 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 HYAL1Q12794 435 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 BMP8AQ7Z5Y6 402 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 IQCA1Q86XH1 822 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 C11orf84Q9BUA3 381 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 AMNQ9BXJ7 453 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 RWDD3Q9Y3V2 267 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 PCDHB15Q9Y5E8 787 aa13.54□□□□□ -0.24
CLSTN3-209ENST00000539982 NLRC5Q86WI3 1866 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 OPLAHO14841 1288 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 GRM6O15303 877 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 CTSHP09668 335 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 PARP1P09874 1014 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 GNAT1P11488 350 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 UBA1P22314 1058 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 PGM5Q15124 567 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 CLUL1Q15846 466 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 FAM26DQ5JW98 314 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 ZNF589Q86UQ0 364 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 SAMD3Q8N6K7 520 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 USP26Q9BXU7 913 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 RALGAPA2Q2PPJ7 1873 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 C5orf42Q9H799 3197 aa13.53□□□□□ -0.24
CLSTN3-209ENST00000539982 STXBP3O00186 592 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 ZNF213O14771 459 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 KDM4AO75164 1064 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 LGALS2P05162 132 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 LINC00271P0C7V0 271 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 NMIQ13287 307 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 ADAM15Q13444 863 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 SMAD4Q13485 552 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 PKN1Q16512 942 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 ZSCAN10Q96SZ4 725 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 PHOX2BQ99453 314 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 PRRX2Q99811 253 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 IGFLR1Q9H665 355 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 SETD4Q9NVD3 440 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 ZBTB47Q9UFB7 747 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 CD207Q9UJ71 328 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 NEDD4P46934 1319 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 CCDC171Q6TFL3 1326 aa13.52□□□□□ -0.25
CLSTN3-209ENST00000539982 PDE1AP54750 535 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 PTPN5P54829 565 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 IER5LQ5T953 404 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 ANKRD45Q5TZF3 282 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 TRIM67Q6ZTA4 783 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 PRSS33Q8NF86 280 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 GPKOWQ92917 476 aaPredicted RBP eCLIP13.51□□□□□ -0.254e-9■■■■■ 56.5
CLSTN3-209ENST00000539982 CLP1Q92989 425 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 PBXIP1Q96AQ6 731 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 BCAS3Q9H6U6 928 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 PCDHA1Q9Y5I3 950 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 TECTAO75443 2155 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 MYH6P13533 1939 aa13.51□□□□□ -0.25
CLSTN3-209ENST00000539982 TMEM221A6NGB7 291 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 TRIM6-TRIM34B2RNG4 842 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 M0R296 226 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 NOP56O00567 594 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 ST18O60284 1047 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 TBX10O75333 385 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 CCND2P30279 289 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 HOXA13P31271 388 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 GTF2F1P35269 517 aaKnown RBP eCLIP13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 MFAP1P55081 439 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 ADAM17P78536 824 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 ENAHQ8N8S7 591 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 IL31RAQ8NI17 732 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 MTMR8Q96EF0 704 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 ZFP91Q96JP5 570 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 PLVAPQ9BX97 442 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 ZSWIM5Q9P217 1185 aa13.5□□□□□ -0.25
CLSTN3-209ENST00000539982 ADGRA3Q8IWK6 1321 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 KLRF2D3W0D1 207 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 GCOM1H8Y6P7 765 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 ENPP3O14638 875 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 ZBTB5O15062 677 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 LINC01565O15544 149 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 PPP1R11O60927 126 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 EYA4O95677 639 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms