RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 STIM2Q9P246 746 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 KIAA1024Q9UPX6 916 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 C6orf229H3BNL8 230 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 POLR2FP61218 127 aaKnown RBP21.48■■□□□ 1.03
PCF11-203ENST00000530304 HYIQ5T013 277 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 NELFCDQ8IXH7 590 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 CEP63Q96MT8 703 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 LSM14BQ9BX40 385 aaKnown RBP21.48■■□□□ 1.03
PCF11-203ENST00000530304 NT5C3AQ9H0P0 336 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 RBM12Q9NTZ6 932 aaKnown RBP21.48■■□□□ 1.03
PCF11-203ENST00000530304 PCDHA2Q9Y5H9 948 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 MYH7BA7E2Y1 1941 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 MS4A14Q96JA4 679 aa21.48■■□□□ 1.03
PCF11-203ENST00000530304 GOLGA6CA6NDK9 693 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 USP17L10C9JJH3 530 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 ZBTB5O15062 677 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 BBOX1O75936 387 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 GOLGA6DP0CG33 693 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 GCFC2P16383 781 aaKnown RBP21.47■■□□□ 1.03
PCF11-203ENST00000530304 FAM76AQ8TAV0 307 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 KANSL2Q9H9L4 492 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 GOLGA6AQ9NYA3 693 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 RSPH14Q9UHP6 348 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 SERPINB13Q9UIV8 391 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 KDM3AQ9Y4C1 1321 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 NPHP3-ACAD11A0A0J9YXS1 232 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 F8W031 263 aaPredicted RBP21.47■■□□□ 1.03
PCF11-203ENST00000530304 APBA1Q02410 837 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 CACNB1Q02641 598 aaPredicted RBP21.47■■□□□ 1.03
PCF11-203ENST00000530304 SLC20A2Q08357 652 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 KCTD1Q719H9 257 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 CCDC65Q8IXS2 484 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 TSKSQ9UJT2 592 aa21.47■■□□□ 1.03
PCF11-203ENST00000530304 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.47■■□□□ 1.03
PCF11-203ENST00000530304 GNA14O95837 355 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 PLA2G4BP0C869 781 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 EPHB4P54760 987 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 CFAP221Q4G0U5 840 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 C8orf74Q6P047 294 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 TRIM59Q8IWR1 403 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 TRIM34Q9BYJ4 488 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 RASSF4Q9H2L5 321 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 PLEKHA4Q9H4M7 779 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 ATP6V0A2Q9Y487 856 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 MARSP56192 900 aaKnown RBP21.46■■□□□ 1.03
PCF11-203ENST00000530304 HERC4Q5GLZ8 1057 aaPredicted RBP21.46■■□□□ 1.03
PCF11-203ENST00000530304 SCFD1Q8WVM8 642 aa21.46■■□□□ 1.03
PCF11-203ENST00000530304 ATF5Q9Y2D1 282 aaPredicted RBP21.46■■□□□ 1.03
PCF11-203ENST00000530304 PALMO75781 387 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 SERPINB2P05120 415 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 GPATCH4Q5T3I0 446 aaKnown RBP21.45■■□□□ 1.02
PCF11-203ENST00000530304 EMBQ6PCB8 327 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 TBC1D5Q92609 795 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 KCTD10Q9H3F6 313 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 SWAP70Q9UH65 585 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 POTEB3A0JP26 581 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 POTECB2RU33 542 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 SHOX2O60902 331 aaPredicted RBP21.45■■□□□ 1.02
PCF11-203ENST00000530304 PPFIA4O75335 1185 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 NAB2Q15742 525 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 POTEBQ6S5H4 581 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 EMILIN3Q9NT22 766 aa21.45■■□□□ 1.02
PCF11-203ENST00000530304 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L15C9J2P7 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L13C9JLJ4 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L11C9JVI0 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L18D6R9N7 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L22D6RA61 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L17D6RBQ6 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L19D6RCP7 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L20D6RJB6 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 SHMT1P34896 483 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L24Q0WX57 530 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 SLC18A3Q16572 532 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 GLE1Q53GS7 698 aaKnown RBP21.44■■□□□ 1.02
PCF11-203ENST00000530304 USP17L6PQ6QN14 398 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 GPBP1Q86WP2 473 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 SH3GL2Q99962 352 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 LUC7LQ9NQ29 371 aaKnown RBP21.44■■□□□ 1.02
PCF11-203ENST00000530304 RNF14Q9UBS8 474 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 MPHOSPH10O00566 681 aaKnown RBP21.44■■□□□ 1.02
PCF11-203ENST00000530304 KLRC1P26715 233 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 TNFRSF8P28908 595 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 ARID5AQ03989 594 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 TSEN2Q8NCE0 465 aaKnown RBP21.44■■□□□ 1.02
PCF11-203ENST00000530304 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.44■■□□□ 1.02
PCF11-203ENST00000530304 LY75O60449 1722 aa21.44■■□□□ 1.02
PCF11-203ENST00000530304 RIMBP2O15034 1052 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 CYP11B2P19099 503 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 ADAM9Q13443 819 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 RAPGEF1Q13905 1077 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 CAVIN3Q969G5 261 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 A0A087X0T9 212 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 FAM228BP0C875 321 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 GYS1P13807 737 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 FAM133AQ8N9E0 248 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 NAP1L4Q99733 375 aaKnown RBP21.43■■□□□ 1.02
PCF11-203ENST00000530304 USP40Q9NVE5 1235 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 ARFGEF1Q9Y6D6 1849 aa21.43■■□□□ 1.02
PCF11-203ENST00000530304 GOLGA8KD6RF30 607 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms