RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 AMNQ9BXJ7 453 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 TANGO6Q9C0B7 1094 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 GLT8D2Q9H1C3 349 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 RANBP17Q9H2T7 1088 aaKnown RBP8.5□□□□□ -1.05
CD44-228ENST00000528455 SLC38A10Q9HBR0 1119 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ZFYVE28Q9HCC9 887 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ZNF358Q9NW07 568 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 MAP3K20Q9NYL2 800 aaKnown RBP8.5□□□□□ -1.05
CD44-228ENST00000528455 CHMP5Q9NZZ3 219 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 PPP1R9AQ9ULJ8 1098 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 RLFQ13129 1914 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 CNTNAP5Q8WYK1 1306 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 H3BQV1 296 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 VWA5AO00534 786 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 CALML3P27482 149 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 GNA11P29992 359 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 SP3Q02447 781 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 ARHGEF6Q15052 776 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 TAF1CQ15572 869 aaPredicted RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 TREML2Q5T2D2 321 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 MCTP2Q6DN12 878 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 FBXO46Q6PJ61 603 aaPredicted RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 RASGRP2Q7LDG7 609 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 FBXO11Q86XK2 927 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 GTF3C2Q8WUA4 911 aaPredicted RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 P2RX7Q99572 595 aaKnown RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 PHF20Q9BVI0 1012 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 ZMYND12Q9H0C1 365 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 ASCC2Q9H1I8 757 aaPredicted RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 CPVLQ9H3G5 476 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 ZSCAN16Q9H4T2 348 aaPredicted RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 FBXO28Q9NVF7 368 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 ZMIZ1Q9ULJ6 1067 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 ISY1Q9ULR0 285 aaKnown RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 NOVA2Q9UNW9 492 aaKnown RBP8.49□□□□□ -1.05
CD44-228ENST00000528455 PCDHA1Q9Y5I3 950 aa8.49□□□□□ -1.05
CD44-228ENST00000528455 PARP14Q460N5 1801 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 hCG_1642624A0A1W2PR95 340 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 ESYT2A0FGR8 921 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 SFI1A8K8P3 1242 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 BTBD19C9JJ37 291 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 BRD1O95696 1058 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 ICAM1P05362 532 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 ZSCAN22P10073 491 aaPredicted RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 U2AF2P26368 475 aaKnown RBP eCLIP8.48□□□□□ -1.05
CD44-228ENST00000528455 RGS19P49795 217 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 MRPL12P52815 198 aaKnown RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 NLRP5P59047 1200 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 SAFBQ15424 915 aaKnown RBP eCLIP8.48□□□□□ -1.05
CD44-228ENST00000528455 CDC37Q16543 378 aaPredicted RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 QRICH1Q2TAL8 776 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 TKFCQ3LXA3 575 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 KRT40Q6A162 431 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 HOMER1Q86YM7 354 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 FAM43AQ8N2R8 423 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 CCDC148Q8NFR7 591 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 BICD2Q8TD16 824 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 FOXP1Q9H334 677 aaPredicted RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 C6orf50Q9HD87 102 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 GMPR2Q9P2T1 348 aaKnown RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 SERTAD1Q9UHV2 236 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 MRPL11Q9Y3B7 192 aaKnown RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 RABGAP1Q9Y3P9 1069 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 TRIM17Q9Y577 477 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 CTDP1Q9Y5B0 961 aaPredicted RBP8.48□□□□□ -1.05
CD44-228ENST00000528455 LOC285556D6RIA3 1793 aa8.48□□□□□ -1.05
CD44-228ENST00000528455 SMCHD1A6NHR9 2005 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 SMCO2A6NFE2 343 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 STXBP3O00186 592 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 PDHXO00330 501 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 TLR2O60603 784 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 PPP1R11O60927 126 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 DTNBO60941 627 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 PPFIA3O75145 1194 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 MMP1P03956 469 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 GPC1P35052 558 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 STAT3P40763 770 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 GCLCP48506 637 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 RNF144AP50876 292 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 SEC13P55735 322 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 HERVK_113P62684 666 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 IRX3P78415 501 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 MLLT1Q03111 559 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 CENPCQ03188 943 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 FOXD4L5Q5VV16 416 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 WWC2Q6AWC2 1192 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 OTOP1Q7RTM1 612 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 HEATR3Q7Z4Q2 680 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 DAGLBQ8NCG7 672 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 REPS2Q8NFH8 660 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 CD99L2Q8TCZ2 262 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 PIBF1Q8WXW3 757 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 COA7Q96BR5 231 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 AIFM3Q96NN9 605 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 PSTPIP2Q9H939 334 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 EFCC1Q9HA90 598 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 BRMS1Q9HCU9 246 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 POLMQ9NP87 494 aaPredicted RBP8.47□□□□□ -1.05
CD44-228ENST00000528455 RIC8AQ9NPQ8 531 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 RBPJLQ9UBG7 517 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms