RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, human

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLNS1A-209	ENST00000527299	ZNF503	Q96F45	646 aa		4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	ZSWIM3	Q96MP5	696 aa		4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	CLIC6	Q96NY7	704 aa		4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	CCDC94	Q9BW85	323 aa	Predicted RBP	4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	PPT2	Q9UMR5	302 aa		4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	SLC12A7	Q9Y666	1083 aa		4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	PEG3	Q9GZU2	1588 aa		4.6	□□□□□ -1.67
CLNS1A-209	ENST00000527299	SLC7A5	Q01650	507 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	OS9	Q13438	667 aa	Predicted RBP	4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	INF2	Q27J81	1249 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	FBXW10	Q5XX13	1052 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	ZBED9	Q6R2W3	1325 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299		Q8N1Y9	231 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	AMER2	Q8N7J2	671 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	ZNF513	Q8N8E2	541 aa	Predicted RBP	4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	WDR33	Q9C0J8	1336 aa	Known RBP	4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	PHAX	Q9H814	394 aa	Known RBP	4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	GPRC5C	Q9NQ84	441 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	FTSJ1	Q9UET6	329 aa		4.59	□□□□□ -1.67
CLNS1A-209	ENST00000527299	FSD2	A1L4K1	749 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	DYNC1I1	O14576	645 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	OFD1	O75665	1012 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SCRN1	Q12765	414 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PRKD1	Q15139	912 aa	Predicted RBP	4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	IGFL4	Q6B9Z1	124 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	RNF207	Q6ZRF8	634 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	KLHL6	Q8WZ60	621 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TOE1	Q96GM8	510 aa	Known RBP	4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	WRNIP1	Q96S55	665 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	YIPF4	Q9BSR8	244 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	BARX1	Q9HBU1	254 aa	Predicted RBP	4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	BTG4	Q9NY30	223 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	RAI14	Q9P0K7	980 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ADAM29	Q9UKF5	820 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ISY1	Q9ULR0	285 aa	Known RBP	4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PCDHB10	Q9UN67	800 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ZNF652	Q9Y2D9	606 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ZDHHC9	Q9Y397	364 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SH3BP1	Q9Y3L3	701 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299		X6R8D5	127 aa		4.58	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ERCC3	P19447	782 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	FPR2	P25090	351 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SATB1	Q01826	763 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ABHD18	Q0P651	414 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	HS1BP3	Q53T59	392 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NGEF	Q8N5V2	710 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TMEM209	Q96SK2	561 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CEP89	Q96ST8	783 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SEC61A2	Q9H9S3	476 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	DTL	Q9NZJ0	730 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CROT	Q9UKG9	612 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	WASF3	Q9UPY6	502 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SUGT1	Q9Y2Z0	365 aa		4.57	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PHLDB1	Q86UU1	1377 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299		A0A1W2PQH9	124 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	FOXS1	O43638	330 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CNOT4	O95628	575 aa	Known RBP	4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	LRG1	P02750	347 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	COL6A1	P12109	1028 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	DPT	Q07507	201 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TCTN3	Q6NUS6	607 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TEPP	Q6URK8	271 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CEP68	Q76N32	757 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	C19orf47	Q8N9M1	422 aa	Known RBP	4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ARRDC4	Q8NCT1	418 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	IKZF4	Q9H2S9	585 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	AKT3	Q9Y243	479 aa		4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.56	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TCRBV5S2	A0A599	114 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299		E9PSI1	815 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	HGS	O14964	777 aa	Predicted RBP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NARS	O43776	548 aa	Known RBP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ZNF202	O95125	648 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	KCNH1	O95259	989 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	RPL11	P62913	178 aa	Known RBP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	MAP2K1	Q02750	393 aa	Predicted RBP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CYP4F3	Q08477	520 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	LMOD3	Q0VAK6	560 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	LDLRAD1	Q5T700	205 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TRMT10B	Q6PF06	316 aa	Known RBP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CASC1	Q6TDU7	716 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	NLRP10	Q86W26	655 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	FRS2	Q8WU20	508 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	EDA	Q92838	391 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	GNRHR2	Q96P88	292 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	ADO	Q96SZ5	270 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	BACH2	Q9BYV9	841 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	RBM28	Q9NW13	759 aa	Known RBP	4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	EMC9	Q9Y3B6	208 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	PRDM2	Q13029	1718 aa		4.55	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CCDC66	A2RUB6	948 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TULP2	O00295	520 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	TADA3	O75528	432 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	KLHL18	O94889	574 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	XRCC6	P12956	609 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	MRE11	P49959	708 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	GTF2A2	P52657	109 aa		4.54	□□□□□ -1.68
CLNS1A-209	ENST00000527299	CHRNA2	Q15822	529 aa		4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms