RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 BCRP11274 1271 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 STAT6P42226 847 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 TM4SF4P48230 202 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 FAM110CQ1W6H9 321 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 NAALADL2Q58DX5 795 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 RRAGBQ5VZM2 374 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 VSIG10LQ86VR7 867 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 ENOX1Q8TC92 643 aaKnown RBP21.17■□□□□ 0.98
VPS28-207ENST00000526977 BLZF1Q9H2G9 400 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 ADD3Q9UEY8 706 aaKnown RBP21.17■□□□□ 0.98
VPS28-207ENST00000526977 POTEB2H3BUK9 544 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 NR3C2P08235 984 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 FCER1AP12319 257 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 CCND2P30279 289 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 CUL4BQ13620 913 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 CT47A1Q5JQC4 288 aaPredicted RBP21.16■□□□□ 0.98
VPS28-207ENST00000526977 PURBQ96QR8 312 aaKnown RBP21.16■□□□□ 0.98
VPS28-207ENST00000526977 PYCARDQ9ULZ3 195 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 UBIAD1Q9Y5Z9 338 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 MSH4O15457 936 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 STAM2O75886 525 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 ERCC5P28715 1186 aaPredicted RBP21.16■□□□□ 0.98
VPS28-207ENST00000526977 APLP1P51693 650 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 MRPS9P82933 396 aaKnown RBP21.16■□□□□ 0.98
VPS28-207ENST00000526977 TAF1CQ15572 869 aaPredicted RBP21.16■□□□□ 0.98
VPS28-207ENST00000526977 DEFB115Q30KQ5 88 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 PAXIP1Q6ZW49 1069 aaPredicted RBP21.16■□□□□ 0.98
VPS28-207ENST00000526977 IL31RAQ8NI17 732 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 MMP19Q99542 508 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 LRWD1Q9UFC0 647 aa21.16■□□□□ 0.98
VPS28-207ENST00000526977 MYCLP12524 364 aaPredicted RBP21.15■□□□□ 0.98
VPS28-207ENST00000526977 CD44P16070 742 aaKnown RBP21.15■□□□□ 0.98
VPS28-207ENST00000526977 ITGB5P18084 799 aa21.15■□□□□ 0.98
VPS28-207ENST00000526977 LRMPQ12912 555 aa21.15■□□□□ 0.98
VPS28-207ENST00000526977 KIAA1524Q8TCG1 905 aa21.15■□□□□ 0.98
VPS28-207ENST00000526977 CACTINQ8WUQ7 758 aaKnown RBP21.15■□□□□ 0.98
VPS28-207ENST00000526977 JADE2Q9NQC1 790 aa21.15■□□□□ 0.98
VPS28-207ENST00000526977 B4DLN1 442 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 STRNO43815 780 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 OFD1O75665 1012 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 NOGQ13253 232 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 WDR78Q5VTH9 848 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 CABP7Q86V35 215 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 FAM133AQ8N9E0 248 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 PORCNQ9H237 461 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 EFCC1Q9HA90 598 aa21.14■□□□□ 0.98
VPS28-207ENST00000526977 RASSF10A6NK89 507 aa21.14■□□□□ 0.97
VPS28-207ENST00000526977 PPP1R3GB7ZBB8 358 aa21.14■□□□□ 0.97
VPS28-207ENST00000526977 MAFGO15525 162 aa21.14■□□□□ 0.97
VPS28-207ENST00000526977 NOLC1Q14978 699 aaKnown RBP eCLIP21.14■□□□□ 0.97
VPS28-207ENST00000526977 CYP4F22Q6NT55 531 aa21.14■□□□□ 0.97
VPS28-207ENST00000526977 REM2Q8IYK8 340 aaPredicted RBP21.14■□□□□ 0.97
VPS28-207ENST00000526977 ABRAQ8N0Z2 381 aa21.14■□□□□ 0.97
VPS28-207ENST00000526977 C17orf53Q8N3J3 647 aaPredicted RBP21.14■□□□□ 0.97
VPS28-207ENST00000526977 PLIN2Q99541 437 aa21.14■□□□□ 0.97
VPS28-207ENST00000526977 MPHOSPH6Q99547 160 aaKnown RBP21.14■□□□□ 0.97
VPS28-207ENST00000526977 CNTN2Q02246 1040 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 FILIP1Q7Z7B0 1213 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 TRMT44Q8IYL2 757 aaKnown RBP21.13■□□□□ 0.97
VPS28-207ENST00000526977 RASSF8Q8NHQ8 419 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 LRRC15Q8TF66 581 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 R3HDMLQ9H3Y0 253 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 ZFYVE28Q9HCC9 887 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 NFE2L3Q9Y4A8 694 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 STK24Q9Y6E0 443 aa21.13■□□□□ 0.97
VPS28-207ENST00000526977 DNAJC25-GNG10A0A024R161 153 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 TLR2O60603 784 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 ARID5BQ14865 1188 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 NLRX1Q86UT6 975 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 SLC5A5Q92911 643 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 ZNF577Q9BSK1 485 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 MMTAG2Q9BU76 263 aaKnown RBP21.12■□□□□ 0.97
VPS28-207ENST00000526977 KCNH7Q9NS40 1196 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 KBTBD4Q9NVX7 518 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 ADGRA2Q96PE1 1338 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 SERPINC1P01008 464 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 RPN1P04843 607 aaKnown RBP21.12■□□□□ 0.97
VPS28-207ENST00000526977 ARP10275 920 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 ZNF18P17022 549 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 MAPK4P31152 587 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 ALDH5A1P51649 535 aaPredicted RBP21.12■□□□□ 0.97
VPS28-207ENST00000526977 UBASH3AP57075 661 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 GRM1Q13255 1194 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 MTMR1Q13613 665 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 STXBP2Q15833 593 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 LRRC8AQ8IWT6 810 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 SMYD4Q8IYR2 804 aaPredicted RBP21.12■□□□□ 0.97
VPS28-207ENST00000526977 GJA10Q969M2 543 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 ZFP91Q96JP5 570 aaPredicted RBP21.12■□□□□ 0.97
VPS28-207ENST00000526977 WDR11Q9BZH6 1224 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 IMPACTQ9P2X3 320 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 IVNS1ABPQ9Y6Y0 642 aa21.12■□□□□ 0.97
VPS28-207ENST00000526977 LOC102724159A0A0B4J2E5 919 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 EIF3JO75822 258 aaKnown RBP21.11■□□□□ 0.97
VPS28-207ENST00000526977 ALDH1A1P00352 501 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 PWP2Q15269 919 aaKnown RBP21.11■□□□□ 0.97
VPS28-207ENST00000526977 KRT79Q5XKE5 535 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 GPRASP2Q96D09 838 aa21.11■□□□□ 0.97
VPS28-207ENST00000526977 NAP1L5Q96NT1 182 aaPredicted RBP21.11■□□□□ 0.97
VPS28-207ENST00000526977 RIT2Q99578 217 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms