RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SDF4Q9BRK5 362 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 MLXIPQ9HAP2 919 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 TBC1D22BQ9NU19 505 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 PHF24Q9UPV7 400 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 MTMR6Q9Y217 621 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 MYH15Q9Y2K3 1946 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 CCNT1O60563 726 aaKnown RBP23.52■■□□□ 1.36
CD44-222ENST00000526025 ANP32AP39687 249 aaKnown RBP23.52■■□□□ 1.36
CD44-222ENST00000526025 ITGB3BPQ13352 177 aaPredicted RBP23.52■■□□□ 1.36
CD44-222ENST00000526025 RILPL1Q5EBL4 403 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 GNASQ5JWF2 1037 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 ETNPPLQ8TBG4 499 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 SLC5A5Q92911 643 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 RIT2Q99578 217 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 ZNF577Q9BSK1 485 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 KCNMB3Q9NPA1 279 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 SCN10AQ9Y5Y9 1956 aa23.52■■□□□ 1.36
CD44-222ENST00000526025 WDR81Q562E7 1941 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 MYADML2A6NDP7 307 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 MSH4O15457 936 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 COL6A1P12109 1028 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 SOX10P56693 466 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 CYFIP1Q7L576 1253 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 AFG1LQ8WV93 481 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 FAM20AQ96MK3 541 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 SPATA33Q96N06 139 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 JPH1Q9HDC5 661 aaPredicted RBP23.51■■□□□ 1.35
CD44-222ENST00000526025 POLR3EQ9NVU0 708 aa23.51■■□□□ 1.35
CD44-222ENST00000526025 DHX15O43143 795 aaKnown RBP23.5■■□□□ 1.35
CD44-222ENST00000526025 SLC37A4O43826 429 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 PPFIA4O75335 1185 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 CABYRO75952 493 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 MMP3P08254 477 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 PTGS1P23219 599 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 KCNA10Q16322 511 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 ZSCAN16Q9H4T2 348 aaPredicted RBP23.5■■□□□ 1.35
CD44-222ENST00000526025 SLC9A2Q9UBY0 812 aa23.5■■□□□ 1.35
CD44-222ENST00000526025 ACLYP53396 1101 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 DGKDQ16760 1214 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 HSDL1Q3SXM5 330 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 TTC38Q5R3I4 469 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 NECAB2Q7Z6G3 386 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 SLFN12Q8IYM2 578 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 GPR20Q99678 358 aa23.49■■□□□ 1.35
CD44-222ENST00000526025 NOP56O00567 594 aaKnown RBP23.48■■□□□ 1.35
CD44-222ENST00000526025 NEMFO60524 1076 aa23.48■■□□□ 1.35
CD44-222ENST00000526025 ASGR1P07306 291 aa23.48■■□□□ 1.35
CD44-222ENST00000526025 TOB1P50616 345 aaPredicted RBP23.48■■□□□ 1.35
CD44-222ENST00000526025 BEX3Q00994 111 aa23.48■■□□□ 1.35
CD44-222ENST00000526025 KRT76Q01546 638 aa23.48■■□□□ 1.35
CD44-222ENST00000526025 ZNF746Q6NUN9 644 aaPredicted RBP23.48■■□□□ 1.35
CD44-222ENST00000526025 BCAS3Q9H6U6 928 aa23.48■■□□□ 1.35
CD44-222ENST00000526025 MYH9P35579 1960 aaKnown RBP23.48■■□□□ 1.35
CD44-222ENST00000526025 PSMD10O75832 226 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 IRX5P78411 483 aaPredicted RBP23.47■■□□□ 1.35
CD44-222ENST00000526025 PURAQ00577 322 aaKnown RBP23.47■■□□□ 1.35
CD44-222ENST00000526025 RESTQ13127 1097 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 POTEDQ86YR6 584 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 SMAP1Q8IYB5 467 aaPredicted RBP23.47■■□□□ 1.35
CD44-222ENST00000526025 SPRYD3Q8NCJ5 442 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 SEZ6LQ9BYH1 1024 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 C11orf49Q9H6J7 331 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 PKD2L1Q9P0L9 805 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 ELP1O95163 1332 aa23.47■■□□□ 1.35
CD44-222ENST00000526025 WNT7AO00755 349 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 GAS7O60861 476 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 ATG7O95352 703 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 BAG4O95429 457 aaKnown RBP23.46■■□□□ 1.35
CD44-222ENST00000526025 MYCNP04198 464 aaPredicted RBP23.46■■□□□ 1.35
CD44-222ENST00000526025 LRCH2Q5VUJ6 765 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 RDM1Q8NG50 284 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 DIS3LQ8TF46 1054 aaKnown RBP23.46■■□□□ 1.35
CD44-222ENST00000526025 SEPT1Q8WYJ6 367 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 HAS1Q92839 578 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 PAWRQ96IZ0 340 aaKnown RBP23.46■■□□□ 1.35
CD44-222ENST00000526025 GLT1D1Q96MS3 346 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 MTMR9Q96QG7 549 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 MTG1Q9BT17 334 aaPredicted RBP23.46■■□□□ 1.35
CD44-222ENST00000526025 TEKT3Q9BXF9 490 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 TCEAL9Q9UHQ7 104 aa23.46■■□□□ 1.35
CD44-222ENST00000526025 A0A1W2PQ45 241 aaPredicted RBP23.45■■□□□ 1.34
CD44-222ENST00000526025 A0A1W2PQY0 241 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 LAD1O00515 517 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 ZSCAN22P10073 491 aaPredicted RBP23.45■■□□□ 1.34
CD44-222ENST00000526025 MCM7P33993 719 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 ACTR2P61160 394 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 CALCRLQ16602 461 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 B3GNT9Q6UX72 402 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 FERMT3Q86UX7 667 aa23.45■■□□□ 1.34
CD44-222ENST00000526025 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.45■■□□□ 1.34
CD44-222ENST00000526025 EMSYQ7Z589 1322 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 CCNE2O96020 404 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 F2P00734 622 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 ATP2B1P20020 1258 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 SFNP31947 248 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 PPP2R5CQ13362 524 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 C1orf53Q5VUE5 145 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 KATNAL1Q9BW62 490 aa23.44■■□□□ 1.34
CD44-222ENST00000526025 GSTTP1A0A1W2PQM5 241 aa23.43■■□□□ 1.34
CD44-222ENST00000526025 LGR5O75473 907 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms