RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PCDHA8Q9Y5H6 950 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 PTCH2Q9Y6C5 1203 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 ARVCFO00192 962 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 KRIT1O00522 736 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 AQP7O14520 342 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 GNAT1P11488 350 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 GRIN1Q05586 938 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 TUSC3Q13454 348 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 C2orf27AQ580R0 203 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 ZC3H18Q86VM9 953 aaKnown RBP6.18□□□□□ -1.42
CD44-217ENST00000525348 PROSER1Q86XN7 944 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 CARFQ8N187 725 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 KYQ8NBH2 561 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 SLC7A14Q8TBB6 771 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 SH3RF2Q8TEC5 729 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 THAP3Q8WTV1 239 aaPredicted RBP6.18□□□□□ -1.42
CD44-217ENST00000525348 TOE1Q96GM8 510 aaKnown RBP6.18□□□□□ -1.42
CD44-217ENST00000525348 DRC1Q96MC2 740 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 LNPKQ9C0E8 428 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 SLC52A2Q9HAB3 445 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 PCDHA9Q9Y5H5 950 aa6.18□□□□□ -1.42
CD44-217ENST00000525348 FAM47E-STBD1D6RA91 191 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 WNT9AO14904 365 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 CRTAMO95727 393 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 GABREP78334 506 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 GUCY1A3Q02108 690 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 PAK1Q13153 545 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 PRR31Q5SQ13 230 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 LCE1DQ5T752 114 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 DPH6Q7L8W6 267 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 MTDHQ86UE4 582 aaKnown RBP6.17□□□□□ -1.42
CD44-217ENST00000525348 SP8Q8IXZ3 490 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 ZDHHC14Q8IZN3 488 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 GSTCDQ8NEC7 633 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 ZSWIM3Q96MP5 696 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 IPO9Q96P70 1041 aaKnown RBP6.17□□□□□ -1.42
CD44-217ENST00000525348 YIPF4Q9BSR8 244 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 ALG1Q9BT22 464 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 CD244Q9BZW8 370 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 PIF1Q9H611 641 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 NDOR1Q9UHB4 597 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 RAPGEFL1Q9UHV5 662 aa6.17□□□□□ -1.42
CD44-217ENST00000525348 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.16□□□□□ -1.42
CD44-217ENST00000525348 PYGMP11217 842 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 NKX3-2P78367 333 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 SPIRE1Q08AE8 756 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 ZC3H12BQ5HYM0 836 aaKnown RBP6.16□□□□□ -1.42
CD44-217ENST00000525348 ZSWIM2Q8NEG5 633 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 TTLL11Q8NHH1 800 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 UBXN4Q92575 508 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 SCLYQ96I15 445 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 CBLCQ9ULV8 474 aa6.16□□□□□ -1.42
CD44-217ENST00000525348 ACOT7O00154 380 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 MAFKO60675 156 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 SASH1O94885 1247 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 RASGRP1O95267 797 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 AMY2AP04746 511 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 SRGAP2CP0DJJ0 459 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 AMY2BP19961 511 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 RPL13P26373 211 aaKnown RBP6.15□□□□□ -1.42
CD44-217ENST00000525348 KCNC1P48547 511 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 SARSP49591 514 aaKnown RBP6.15□□□□□ -1.42
CD44-217ENST00000525348 EPHA5P54756 1037 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 SQSTM1Q13501 440 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 CCDC144BQ3MJ40 725 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 TRIM61Q5EBN2 209 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 TMC5Q6UXY8 1006 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 ZNF761Q86XN6 746 aaPredicted RBP6.15□□□□□ -1.42
CD44-217ENST00000525348 TTLL6Q8N841 843 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 PDGFDQ9GZP0 370 aaPredicted RBP6.15□□□□□ -1.42
CD44-217ENST00000525348 ADAM7Q9H2U9 754 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 ZSWIM4Q9H7M6 989 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 PCDH18Q9HCL0 1135 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 NGRNQ9NPE2 291 aaKnown RBP6.15□□□□□ -1.42
CD44-217ENST00000525348 HSPBP1Q9NZL4 362 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 NTMQ9P121 344 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 DSEQ9UL01 958 aa6.15□□□□□ -1.42
CD44-217ENST00000525348 SMARCA5O60264 1052 aaPredicted RBP6.14□□□□□ -1.43
CD44-217ENST00000525348 CKMP06732 381 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 FAHP16930 419 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 PAN2Q504Q3 1202 aaKnown RBP6.14□□□□□ -1.43
CD44-217ENST00000525348 PHF19Q5T6S3 580 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 NT5DC1Q5TFE4 455 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 LILRA6Q6PI73 481 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 KCTD1Q719H9 257 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 FGD2Q7Z6J4 655 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 ADAMTS17Q8TE56 1095 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 FBXW5Q969U6 566 aa6.14□□□□□ -1.43
CD44-217ENST00000525348 MAN2B1O00754 1011 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 NOBOXO60393 691 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 PDE6AP16499 860 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 CTSWP56202 376 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 JAM2P57087 298 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 GPR19Q15760 415 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 NFE2L2Q16236 605 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 ARHGAP36Q6ZRI8 547 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 TTLL7Q6ZT98 887 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 BRAPQ7Z569 592 aa6.13□□□□□ -1.43
CD44-217ENST00000525348 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.13□□□□□ -1.43
CD44-217ENST00000525348 OSTM1Q86WC4 334 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms