RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 GTF2IRD1Q9UHL9 959 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 UBIAD1Q9Y5Z9 338 aa18.61■□□□□ 0.57
LSM1-205ENST00000523511 HAS3O00219 553 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 TOB2Q14106 344 aaPredicted RBP18.6■□□□□ 0.57
LSM1-205ENST00000523511 ZNF365Q70YC5 407 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 FAM177A1Q8N128 213 aaPredicted RBP18.6■□□□□ 0.57
LSM1-205ENST00000523511 DEFB123Q8N688 67 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 SEPT1Q8WYJ6 367 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 PHKBQ93100 1093 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 GPR20Q99678 358 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.6■□□□□ 0.57
LSM1-205ENST00000523511 SDF4Q9BRK5 362 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 ANO3Q9BYT9 981 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 HDAC6Q9UBN7 1215 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 MYH6P13533 1939 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 DNAH12Q6ZR08 3092 aa18.6■□□□□ 0.57
LSM1-205ENST00000523511 ZNF286BP0CG31 522 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 XBP1P17861 261 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 ITGB5P18084 799 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 EPHB4P54760 987 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 PTK7Q13308 1070 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 CEP55Q53EZ4 464 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 TMEM240Q5SV17 173 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 REXO1Q8N1G1 1221 aaKnown RBP18.59■□□□□ 0.57
LSM1-205ENST00000523511 AFAP1L1Q8TED9 768 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 C22orf23Q9BZE7 217 aa18.59■□□□□ 0.57
LSM1-205ENST00000523511 SLKQ9H2G2 1235 aaPredicted RBP18.59■□□□□ 0.57
LSM1-205ENST00000523511 C17orf102A2RUQ5 167 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 DEXIO95424 95 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 LGALS2P05162 132 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 ACRP10323 421 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 SREBF1P36956 1147 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 CLK2P49760 499 aaKnown RBP18.58■□□□□ 0.56
LSM1-205ENST00000523511 NLRP5P59047 1200 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 NTRK3Q16288 839 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 ZNF697Q5TEC3 545 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 JAKMIP3Q5VZ66 844 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 GDF6Q6KF10 455 aaPredicted RBP18.58■□□□□ 0.56
LSM1-205ENST00000523511 TYW1BQ6NUM6 668 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 NIPA1Q7RTP0 329 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 C16orf70Q9BSU1 422 aa18.58■□□□□ 0.56
LSM1-205ENST00000523511 IQCF3P0C7M6 154 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 SP4Q02446 784 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 SEMA3FQ13275 785 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 PKN1Q16512 942 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 UTP14CQ5TAP6 766 aaKnown RBP18.57■□□□□ 0.56
LSM1-205ENST00000523511 HERVK_113Q902F9 699 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 FTOQ9C0B1 505 aaKnown RBP eCLIP18.57■□□□□ 0.56
LSM1-205ENST00000523511 AZI2Q9H6S1 392 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 NCOA5Q9HCD5 579 aaKnown RBP18.57■□□□□ 0.56
LSM1-205ENST00000523511 KCNH7Q9NS40 1196 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 TCEAL9Q9UHQ7 104 aa18.57■□□□□ 0.56
LSM1-205ENST00000523511 SELPP16109 830 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 KCNA2P16389 499 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 ARHGAP4P98171 946 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 STK3Q13188 491 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 GALNT17Q6IS24 598 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 C16orf59Q7L2K0 433 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 GLG1Q92896 1179 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 ATP6V0A1Q93050 837 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 SCLYQ96I15 445 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 SMARCAD1Q9H4L7 1026 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 JPH1Q9HDC5 661 aaPredicted RBP18.56■□□□□ 0.56
LSM1-205ENST00000523511 ERAP1Q9NZ08 941 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 SLC9A2Q9UBY0 812 aa18.56■□□□□ 0.56
LSM1-205ENST00000523511 BAZ2BQ9UIF8 2168 aaKnown RBP18.55■□□□□ 0.56
LSM1-205ENST00000523511 NFASCO94856 1347 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 UMODL1Q5DID0 1318 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 TMEM265A0A087WTH1 108 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 MEIS1O00470 390 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 ATP9AO75110 1047 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 CYP3A4P08684 503 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 TCF7P36402 384 aaPredicted RBP18.55■□□□□ 0.56
LSM1-205ENST00000523511 OTOP2Q7RTS6 562 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 WASF1Q92558 559 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 WNT8AQ9H1J5 351 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 TMEM260Q9NX78 707 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 PKD2L1Q9P0L9 805 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 MSRAQ9UJ68 235 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 SLC4A7Q9Y6M7 1214 aa18.55■□□□□ 0.56
LSM1-205ENST00000523511 NRCAMQ92823 1304 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 ZBBXA8MT70 800 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 SMIM10L2AP0DMW4 78 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 SMIM10L2BP0DMW5 78 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 SETQ01105 290 aaPredicted RBP18.54■□□□□ 0.56
LSM1-205ENST00000523511 LRRC8DQ7L1W4 858 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 DEFB128Q7Z7B8 93 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 PPP1R13LQ8WUF5 828 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 PGBD1Q96JS3 809 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 BCAS3Q9H6U6 928 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 TBC1D22BQ9NU19 505 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 VPS54Q9P1Q0 977 aa18.54■□□□□ 0.56
LSM1-205ENST00000523511 CAND2O75155 1236 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 RPLP2P05387 115 aaKnown RBP18.53■□□□□ 0.56
LSM1-205ENST00000523511 CKBP12277 381 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 USP11P51784 963 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 RBL2Q08999 1139 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 RAB30Q15771 203 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 RASIP1Q5U651 963 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 PLA2G4DQ86XP0 818 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms