RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 PNMA2Q9UL42 364 aa8.47□□□□□ -1.05
USP46-208ENST00000512656 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.47□□□□□ -1.05
USP46-208ENST00000512656 UNC80Q8N2C7 3258 aa8.46□□□□□ -1.05
USP46-208ENST00000512656 TMEM265A0A087WTH1 108 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 ARVCFO00192 962 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 ZEB2O60315 1214 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 CABYRO75952 493 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 TIMP1P01033 207 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 ASGR1P07306 291 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 ALAS1P13196 640 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 MFAP1P55081 439 aaKnown RBP8.46□□□□□ -1.06
USP46-208ENST00000512656 MARSP56192 900 aaKnown RBP8.46□□□□□ -1.06
USP46-208ENST00000512656 CNTN2Q02246 1040 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 TNFAIP2Q03169 654 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 FAAP100Q0VG06 881 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 CCDC96Q2M329 555 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 CCSAPQ6IQ19 270 aaPredicted RBP8.46□□□□□ -1.06
USP46-208ENST00000512656 CCDC129Q6ZRS4 1044 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 KCTD1Q719H9 257 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 FAM133AQ8N9E0 248 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 DCAF4Q8WV16 495 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 GTPBP3Q969Y2 492 aaKnown RBP8.46□□□□□ -1.06
USP46-208ENST00000512656 FAM161BQ96MY7 647 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 GUCD1Q96NT3 240 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 SEZ6LQ9BYH1 1024 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 AP5M1Q9H0R1 490 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 NUCKS1Q9H1E3 243 aaKnown RBP8.46□□□□□ -1.06
USP46-208ENST00000512656 SEMA6BQ9H3T3 888 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 A1CFQ9NQ94 594 aaKnown RBP8.46□□□□□ -1.06
USP46-208ENST00000512656 TOMM22Q9NS69 142 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 CCPG1Q9ULG6 757 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 PRR12Q9ULL5 1215 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 PLXNA1Q9UIW2 1896 aa8.46□□□□□ -1.06
USP46-208ENST00000512656 MYH4Q9Y623 1939 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 FGRP09769 529 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 TOP1P11387 765 aaKnown RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 PCP11498 1178 aaKnown RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 ITGB8P26012 769 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 CDK7P50613 346 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 PDE1AP54750 535 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 NKX3-2P78367 333 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 PPIGQ13427 754 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP46-208ENST00000512656 HDAC1Q13547 482 aaPredicted RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 MCMDC2Q4G0Z9 681 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 IQSEC1Q6DN90 963 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 MFSD5Q6N075 450 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 TMEM199Q8N511 208 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 FGD4Q96M96 766 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 MPHOSPH6Q99547 160 aaKnown RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 CDX2Q99626 313 aaPredicted RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 GDPD2Q9HCC8 539 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 IL17RBQ9NRM6 502 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 ADD3Q9UEY8 706 aaKnown RBP8.45□□□□□ -1.06
USP46-208ENST00000512656 TBX21Q9UL17 535 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 ZNF536O15090 1300 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 SALL3Q9BXA9 1300 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 LTBP2Q14767 1821 aa8.45□□□□□ -1.06
USP46-208ENST00000512656 LOC102724159A0A0B4J2E5 919 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 MYADML2A6NDP7 307 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 FOXP2O15409 715 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 NMT2O60551 498 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 FGAP02671 866 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 ICAM1P05362 532 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 NOVP48745 357 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 NT5C2P49902 561 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 VAC14Q08AM6 782 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 MCM6Q14566 821 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 PWP2Q15269 919 aaKnown RBP8.44□□□□□ -1.06
USP46-208ENST00000512656 FSCN1Q16658 493 aaKnown RBP8.44□□□□□ -1.06
USP46-208ENST00000512656 RRP12Q5JTH9 1297 aaKnown RBP8.44□□□□□ -1.06
USP46-208ENST00000512656 VPS53Q5VIR6 699 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 SYDE2Q5VT97 1194 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 PSRC1Q6PGN9 363 aaPredicted RBP8.44□□□□□ -1.06
USP46-208ENST00000512656 BTNL9Q6UXG8 535 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 NSMFQ6X4W1 530 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP46-208ENST00000512656 CHMP4CQ96CF2 233 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 TTC14Q96N46 770 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 CRBNQ96SW2 442 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 KATNBL1Q9H079 304 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 MTIF3Q9H2K0 278 aaKnown RBP8.44□□□□□ -1.06
USP46-208ENST00000512656 RNF41Q9H4P4 317 aaPredicted RBP8.44□□□□□ -1.06
USP46-208ENST00000512656 VTA1Q9NP79 307 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 TCP11L1Q9NUJ3 509 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 CYP39A1Q9NYL5 469 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 MTMR7Q9Y216 660 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 Q9Y3F1 56 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 ZMYM6O95789 1325 aa8.44□□□□□ -1.06
USP46-208ENST00000512656 B4DLN1 442 aa8.43□□□□□ -1.06
USP46-208ENST00000512656 DYNC1LI2O43237 492 aaPredicted RBP8.43□□□□□ -1.06
USP46-208ENST00000512656 ADCY6O43306 1168 aa8.43□□□□□ -1.06
USP46-208ENST00000512656 MX2P20592 715 aa8.43□□□□□ -1.06
USP46-208ENST00000512656 ABL2P42684 1182 aa8.43□□□□□ -1.06
USP46-208ENST00000512656 MRPL12P52815 198 aaKnown RBP8.43□□□□□ -1.06
USP46-208ENST00000512656 EPHB4P54760 987 aa8.43□□□□□ -1.06
USP46-208ENST00000512656 TSGA10IPQ3SY00 556 aa8.43□□□□□ -1.06
USP46-208ENST00000512656 BRDTQ58F21 947 aaPredicted RBP8.43□□□□□ -1.06
USP46-208ENST00000512656 CCDC178Q5BJE1 867 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms