RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 BMP2KLQ5H9B9 411 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 PCNX4Q63HM2 1172 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 KCNV1Q6PIU1 500 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 CASC1Q6TDU7 716 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 SMARCC2Q8TAQ2 1214 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 CAGE1Q8TC20 777 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 GAS2L1Q99501 681 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 MTA3Q9BTC8 594 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 TUT1Q9H6E5 874 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 SETD4Q9NVD3 440 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 CHD9Q3L8U1 2897 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 VCANP13611 3396 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 KAT6AQ92794 2004 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 CCDC69A6NI79 296 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 LPXNO60711 386 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 SP4Q02446 784 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 TMTC3Q6ZXV5 915 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 SERINC5Q86VE9 423 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 SGMS1Q86VZ5 419 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 TMTC2Q8N394 836 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 CYP2W1Q8TAV3 490 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 PHOSPHO2Q8TCD6 241 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 ZBTB10Q96DT7 871 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 PSTPIP2Q9H939 334 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 SLC12A7Q9Y666 1083 aa12.88□□□□□ -0.35
LIMCH1-214ENST00000512228 GSTTP1A0A1W2PQM5 241 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 ACTN1P12814 892 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 KCNA2P16389 499 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 CDC27P30260 824 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 KIF5BP33176 963 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 THPOP40225 353 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 ADAM17P78536 824 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 UTP14CQ5TAP6 766 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 FAM117BQ6P1L5 589 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 METTL7BQ6UX53 244 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 MICU3Q86XE3 530 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 DBF4BQ8NFT6 615 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 ARNTL2Q8WYA1 636 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 PGBD1Q96JS3 809 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 NEK1Q96PY6 1258 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 SLC9A7Q96T83 725 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 LZTS2Q9BRK4 669 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 KATNAL1Q9BW62 490 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 PKD2L1Q9P0L9 805 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 CHD7Q9P2D1 2997 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 UBIAD1Q9Y5Z9 338 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 MTCH2Q9Y6C9 303 aa12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 V9GY48 417 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-214ENST00000512228 MICAL3Q7RTP6 2002 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 FIBPO43427 364 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 GNAQP50148 359 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 TFF2Q03403 129 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 TRAF1Q13077 416 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 TSGA10IPQ3SY00 556 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 WWC2Q6AWC2 1192 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 CNKSR3Q6P9H4 555 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 APOA5Q6Q788 366 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 CENPQQ7L2Z9 268 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 DHX32Q7L7V1 743 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 ATP6V0A1Q93050 837 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 PCYT2Q99447 389 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 TMEM260Q9NX78 707 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 PCDHA6Q9UN73 950 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 PCDHA8Q9Y5H6 950 aa12.86□□□□□ -0.35
LIMCH1-214ENST00000512228 SIP14410 1827 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 REV3LO60673 3130 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 C17orf102A2RUQ5 167 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 RSPH10B2B2RC85 870 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 TLL1O43897 1013 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 LGR5O75473 907 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 STAM2O75886 525 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 BAIAP3O94812 1187 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 RSPH10BP0C881 870 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 POU3F3P20264 500 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 GRB10Q13322 594 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 NEDD9Q14511 834 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 RUFY4Q6ZNE9 571 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 HEATR3Q7Z4Q2 680 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 MICALL1Q8N3F8 863 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 LMBR1Q8WVP7 490 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 KCNB2Q92953 911 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 ASB2Q96Q27 587 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 SENP7Q9BQF6 1050 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 USP26Q9BXU7 913 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 SEC63Q9UGP8 760 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 LOXHD1Q8IVV2 1947 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 CNTNAP5Q8WYK1 1306 aa12.85□□□□□ -0.35
LIMCH1-214ENST00000512228 ABHD14A-ACY1A0A1B0GW23 586 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 NOP56O00567 594 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 GJB5O95377 273 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CHRNA1P02708 482 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CTSHP09668 335 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CALM1P0DP23 149 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CALM2P0DP24 149 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 CALM3P0DP25 149 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 ARP10275 920 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 ADD1P35611 737 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 TCF7P36402 384 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 GNPTABQ3T906 1256 aa12.84□□□□□ -0.35
LIMCH1-214ENST00000512228 PLEKHG4Q58EX7 1191 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms