RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 H3BRB1 525 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 RBAK-RBAKDNI3L0D1 243 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 LGALS2P05162 132 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 CKBP12277 381 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 SELPP16109 830 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 PTK7Q13308 1070 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 TRAF7Q6Q0C0 670 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 GPRASP2Q96D09 838 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 USP26Q9BXU7 913 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 AGXT2Q9BYV1 514 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 TUT1Q9H6E5 874 aaKnown RBP20.59■□□□□ 0.89
TPM3-220ENST00000509601 RIC8AQ9NPQ8 531 aa20.59■□□□□ 0.89
TPM3-220ENST00000509601 ZBBXA8MT70 800 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 STXBP3O00186 592 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 KCNA2P16389 499 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 RPS6KB1P23443 525 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 HOXC8P31273 242 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 RABGGTBP53611 331 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 BLOC1S2Q6QNY1 142 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 CCDC155Q8N6L0 562 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 BRF1Q92994 677 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 RNPEPQ9H4A4 650 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 MSRAQ9UJ68 235 aa20.58■□□□□ 0.89
TPM3-220ENST00000509601 UNC80Q8N2C7 3258 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 SPDYE3A6NKU9 549 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 NOP56O00567 594 aaKnown RBP20.57■□□□□ 0.88
TPM3-220ENST00000509601 NBNO60934 754 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 REC8O95072 547 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 MYOGP15173 224 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 NAPAP54920 295 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 RAB30Q15771 203 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 LRRC8DQ7L1W4 858 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 PRUNE2Q8WUY3 3088 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 FTOQ9C0B1 505 aaKnown RBP eCLIP20.57■□□□□ 0.887e-6■■□□□ 12.9
TPM3-220ENST00000509601 NKX2-4Q9H2Z4 354 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 DOCK5Q9H7D0 1870 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 JADE2Q9NQC1 790 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 BARHL2Q9NY43 387 aa20.57■□□□□ 0.88
TPM3-220ENST00000509601 SMCO2A6NFE2 343 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 EPB41L2O43491 1005 aaKnown RBP20.56■□□□□ 0.88
TPM3-220ENST00000509601 CXCL10P02778 98 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 NEFLP07196 543 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 SMIM10L2AP0DMW4 78 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 SMIM10L2BP0DMW5 78 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 ACTN1P12814 892 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 FGD1P98174 961 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 TCTN1Q2MV58 587 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 ZNF618Q5T7W0 954 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 PPP1R18Q6NYC8 613 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 GIMAP8Q8ND71 665 aaPredicted RBP20.56■□□□□ 0.88
TPM3-220ENST00000509601 CYP2W1Q8TAV3 490 aa20.56■□□□□ 0.88
TPM3-220ENST00000509601 NAP1L2Q9ULW6 460 aaPredicted RBP20.56■□□□□ 0.88
TPM3-220ENST00000509601 GSTTP1A0A1W2PQM5 241 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 C17orf102A2RUQ5 167 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 MAFGO15525 162 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 ATP2A2P16615 1042 aaKnown RBP20.55■□□□□ 0.88
TPM3-220ENST00000509601 METAP2P50579 478 aaKnown RBP eCLIP20.55■□□□□ 0.88
TPM3-220ENST00000509601 MBTPS1Q14703 1052 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 UTP14CQ5TAP6 766 aaKnown RBP20.55■□□□□ 0.88
TPM3-220ENST00000509601 SERINC5Q86VE9 423 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 TEX2Q8IWB9 1127 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 CDHR1Q96JP9 859 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 PGBD1Q96JS3 809 aa20.55■□□□□ 0.88
TPM3-220ENST00000509601 CHD7Q9P2D1 2997 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 hCG_1984214I3L0E3 225 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 ADAMTS3O15072 1205 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 TREHO43280 583 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 FOSP01100 380 aaPredicted RBP20.54■□□□□ 0.88
TPM3-220ENST00000509601 FOSL2P15408 326 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 PSMA5P28066 241 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 CLK2P49760 499 aaKnown RBP20.54■□□□□ 0.88
TPM3-220ENST00000509601 EVCP57679 992 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 SP4Q02446 784 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 NTRK3Q16288 839 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 PKN1Q16512 942 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 PFKFB3Q16875 520 aaPredicted RBP20.54■□□□□ 0.88
TPM3-220ENST00000509601 TRIM50Q86XT4 487 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 ZNF713Q8N859 430 aaPredicted RBP20.54■□□□□ 0.88
TPM3-220ENST00000509601 MAFAQ8NHW3 353 aaPredicted RBP20.54■□□□□ 0.88
TPM3-220ENST00000509601 PHOSPHO2Q8TCD6 241 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 ATP6V0A1Q93050 837 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 MXRA8Q9BRK3 442 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 ZSWIM6Q9HCJ5 1215 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 SETD4Q9NVD3 440 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 TMEM260Q9NX78 707 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 PPP4R2Q9NY27 417 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 PCDHA11Q9Y5I1 949 aa20.54■□□□□ 0.88
TPM3-220ENST00000509601 CCDC196A0A1B0GTZ2 297 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 PRPF3O43395 683 aaKnown RBP20.53■□□□□ 0.88
TPM3-220ENST00000509601 PARNO95453 639 aaKnown RBP20.53■□□□□ 0.88
TPM3-220ENST00000509601 ADCY7P51828 1080 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 ADAM17P78536 824 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 MTMR1Q13613 665 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 SEPT1Q8WYJ6 367 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 ANO3Q9BYT9 981 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 PRDM12Q9H4Q4 367 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 SLC28A3Q9HAS3 691 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 PKD2L1Q9P0L9 805 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 NID2Q14112 1375 aa20.53■□□□□ 0.88
TPM3-220ENST00000509601 GBF1Q92538 1859 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms