RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 DOCK5Q9H7D0 1870 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 FAM205CA6NFA0 338 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 MEIS1O00470 390 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 MAFGO15525 162 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 MARCH6O60337 910 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 ATP9AO75110 1047 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 MMP3P08254 477 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 COL6A1P12109 1028 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 RGS19P49795 217 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 CUL4AQ13619 759 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 DGKDQ16760 1214 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 LARP1BQ659C4 914 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 METTL7BQ6UX53 244 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 NIPA1Q7RTP0 329 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 UBE2Q1Q7Z7E8 422 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 PPTC7Q8NI37 304 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 ZNF577Q9BSK1 485 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 MTG1Q9BT17 334 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 BCAS3Q9H6U6 928 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 AGO4Q9HCK5 861 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 ATP11BQ9Y2G3 1177 aa12.97□□□□□ -0.33
LIMCH1-210ENST00000509454 A0A0U1RQG5 324 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 A6NJR5 290 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 EVI5O60447 810 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 CCNT1O60563 726 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 KPNA6O60684 536 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 CABYRO75952 493 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 TDP2O95551 362 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 ZNF286BP0CG31 522 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 KCNA2P16389 499 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 PSMC6P62333 389 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 FAM47CQ5HY64 1035 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 UTP14CQ5TAP6 766 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 CCSAPQ6IQ19 270 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 C7orf61Q8IZ16 206 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 SPRYD3Q8NCJ5 442 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 EMID1Q96A84 441 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 SENP7Q9BQF6 1050 aa12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 JPH1Q9HDC5 661 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 DDX25Q9UHL0 483 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-210ENST00000509454 VPS37CA5D8V6 355 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 IPO5O00410 1097 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 PQBP1O60828 265 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 CIITAP33076 1130 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 RTP1P59025 263 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 NKX3-2P78367 333 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 PURAQ00577 322 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 LRRC26Q2I0M4 334 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 HSDL1Q3SXM5 330 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 EARS2Q5JPH6 523 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 SLC39A5Q6ZMH5 540 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 CRYGNQ8WXF5 182 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 NAP1L4Q99733 375 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 SLC9A2Q9UBY0 812 aa12.95□□□□□ -0.34
LIMCH1-210ENST00000509454 IGLV3-22A0A075B6J6 115 aa12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 ITGB3BPQ13352 177 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 ITGA7Q13683 1181 aa12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 TRIM60Q495X7 471 aa12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 PPP1R13LQ8WUF5 828 aa12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 TNFRSF25Q93038 417 aa12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 FOXP1Q9H334 677 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 NOL7Q9UMY1 257 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 ELP1O95163 1332 aa12.94□□□□□ -0.34
LIMCH1-210ENST00000509454 MSH4O15457 936 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 GAS7O60861 476 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 PPFIA4O75335 1185 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 GCFC2P16383 781 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 PDCP20941 246 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 Q4G0T1 1027 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 LRCH2Q5VUJ6 765 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 NOSTRINQ8IVI9 506 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 INTS4Q96HW7 963 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 GPR20Q99678 358 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 KATNAL1Q9BW62 490 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 PRDM5Q9NQX1 630 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 TELO2Q9Y4R8 837 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 SAMM50Q9Y512 469 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 NFASCO94856 1347 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 KIF28PB7ZC32 967 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 ARVCFO00192 962 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 BACH1O14867 736 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 CHMP2AO43633 222 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 SLC37A4O43826 429 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 LGALS2P05162 132 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 TCF7P36402 384 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 PSEN2P49810 448 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 BECN1Q14457 450 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 MFSD10Q14728 455 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 NBPF20Q3BBV1 942 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 MOXD1Q6UVY6 613 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 SEPT1Q8WYJ6 367 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 GLG1Q92896 1179 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 GJA10Q969M2 543 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 TEKT3Q9BXF9 490 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 AZI2Q9H6S1 392 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 TBC1D22BQ9NU19 505 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 PRKAG2Q9UGJ0 569 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 ZNF215Q9UL58 517 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 NR2E3Q9Y5X4 410 aa12.93□□□□□ -0.34
LIMCH1-210ENST00000509454 CYP3A7-CYP3A51PA0A087WV96 503 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms