RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 NR2E3Q9Y5X4 410 aa10.38□□□□□ -0.75
NUP54-207ENST00000508583 MKI67P46013 3256 aaKnown RBP10.38□□□□□ -0.75
NUP54-207ENST00000508583 MYH7BA7E2Y1 1941 aa10.38□□□□□ -0.75
NUP54-207ENST00000508583 CYP3A7-CYP3A51PA0A087WV96 503 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 A0A0U1RQG5 324 aaPredicted RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 IPO5O00410 1097 aaKnown RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 PPFIA4O75335 1185 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 MMP3P08254 477 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 CYP3A7P24462 503 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 GJB2P29033 226 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 MNX1P50219 401 aaPredicted RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 NPY5RQ15761 445 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 PRR16Q569H4 304 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 PPP4R3AQ6IN85 833 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 CCSAPQ6IQ19 270 aaPredicted RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 AFG1LQ8WV93 481 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 TNPO1Q92973 898 aaKnown RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 ZNF577Q9BSK1 485 aa10.37□□□□□ -0.75
NUP54-207ENST00000508583 ZNF215Q9UL58 517 aaPredicted RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 NOL7Q9UMY1 257 aaKnown RBP10.37□□□□□ -0.75
NUP54-207ENST00000508583 MYADML2A6NDP7 307 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 BTBD18B2RXH4 712 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 FAM86B1E9PN63 330 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 TLR3O15455 904 aaKnown RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 EVI5O60447 810 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 MYL3P08590 195 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 FAM86B2P0C5J1 330 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 HOXD8P13378 290 aaPredicted RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 KCNA2P16389 499 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 PTGS1P23219 599 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 TRAPPC10P48553 1259 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 FOSBP53539 338 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 PURAQ00577 322 aaKnown RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 BEX3Q00994 111 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 ORC2Q13416 577 aaPredicted RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 BECN1Q14457 450 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 SNX17Q15036 470 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 INF2Q27J81 1249 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 LETM2Q2VYF4 491 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 Q4G0T1 1027 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 TMEM63BQ5T3F8 832 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 LARP1BQ659C4 914 aaKnown RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 CXCL17Q6UXB2 119 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 CYFIP1Q7L576 1253 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 SMAP1Q8IYB5 467 aaPredicted RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 DPF3Q92784 378 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 COPS5Q92905 334 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 RIT2Q99578 217 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 AGO4Q9HCK5 861 aaKnown RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 SLC9A2Q9UBY0 812 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 PRKAG2Q9UGJ0 569 aa10.36□□□□□ -0.75
NUP54-207ENST00000508583 DDX25Q9UHL0 483 aaKnown RBP10.36□□□□□ -0.75
NUP54-207ENST00000508583 ALPK3Q96L96 1907 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 IGLV3-22A0A075B6J6 115 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 DCDC2CA8MYV0 355 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 TBX3O15119 743 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 CTAGE5O15320 804 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 MARCH6O60337 910 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 CCNT1O60563 726 aaKnown RBP10.35□□□□□ -0.75
NUP54-207ENST00000508583 DTNBO60941 627 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 BAG4O95429 457 aaKnown RBP10.35□□□□□ -0.75
NUP54-207ENST00000508583 SUPT20HL2P0C7V6 817 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 KRT76Q01546 638 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 SP2Q02086 613 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 PTPN11Q06124 597 aaPredicted RBP10.35□□□□□ -0.75
NUP54-207ENST00000508583 SEMA3FQ13275 785 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 NR5A1Q13285 461 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 ITGA7Q13683 1181 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 NFRKBQ6P4R8 1299 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 SLC39A5Q6ZMH5 540 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 NOSTRINQ8IVI9 506 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 OXER1Q8TDS5 423 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 SEPT1Q8WYJ6 367 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 FERMT2Q96AC1 680 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 ZFP91Q96JP5 570 aaPredicted RBP10.35□□□□□ -0.75
NUP54-207ENST00000508583 FAM20AQ96MK3 541 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 TOX2Q96NM4 488 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 AZI2Q9H6S1 392 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 GJB4Q9NTQ9 266 aa10.35□□□□□ -0.75
NUP54-207ENST00000508583 ARVCFO00192 962 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 GAS7O60861 476 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 F2P00734 622 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 U2AF2P26368 475 aaKnown RBP eCLIP10.34□□□□□ -0.755e-7■□□□□ 8.9
NUP54-207ENST00000508583 SFNP31947 248 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 SLC26A2P50443 739 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 ATN1P54259 1190 aaPredicted RBP10.34□□□□□ -0.75
NUP54-207ENST00000508583 IRX5P78411 483 aaPredicted RBP10.34□□□□□ -0.75
NUP54-207ENST00000508583 GUCY1B3Q02153 619 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 HSDL1Q3SXM5 330 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 LRCH2Q5VUJ6 765 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 FAM160B1Q5W0V3 765 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 MCTP1Q6DN14 999 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 ZNF746Q6NUN9 644 aaPredicted RBP10.34□□□□□ -0.75
NUP54-207ENST00000508583 MIS18BP1Q6P0N0 1132 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 ANKRD33Q7Z3H0 272 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 SLFN12Q8IYM2 578 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 RDM1Q8NG50 284 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 CYP2W1Q8TAV3 490 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 TNFRSF25Q93038 417 aa10.34□□□□□ -0.75
NUP54-207ENST00000508583 MBOAT7Q96N66 472 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms