RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 RNF169Q8NCN4 708 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 AK9Q5TCS8 1911 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 ENC1O14682 589 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 HOXA10P31260 410 aaPredicted RBP15.47■□□□□ 0.07
TCOF1-207ENST00000504761 GDAP1L1Q96MZ0 367 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 NDST4Q9H3R1 872 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 ERCC6LQ2NKX8 1250 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 PPP1R18Q6NYC8 613 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 GOLGA5Q8TBA6 731 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 RAD54LQ92698 747 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 VCPKMTQ9H867 229 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 PCDHAC2Q9Y5I4 1007 aa15.47■□□□□ 0.07
TCOF1-207ENST00000504761 DHX40Q8IX18 779 aaKnown RBP15.46■□□□□ 0.07
TCOF1-207ENST00000504761 KLHL7Q8IXQ5 586 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 CDHR1Q96JP9 859 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 PPP1R13BQ96KQ4 1090 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 FAM20AQ96MK3 541 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 DLG5Q8TDM6 1919 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 IGSF3O75054 1194 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 CDC25BP30305 580 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 CCDC25Q86WR0 208 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 ELP3Q9H9T3 547 aa15.46■□□□□ 0.07
TCOF1-207ENST00000504761 CWC15Q9P013 229 aaKnown RBP15.46■□□□□ 0.07
TCOF1-207ENST00000504761 MRC1P22897 1456 aa15.46■□□□□ 0.06
TCOF1-207ENST00000504761 PALM3A6NDB9 673 aaPredicted RBP15.46■□□□□ 0.06
TCOF1-207ENST00000504761 GAP43P17677 238 aa15.46■□□□□ 0.06
TCOF1-207ENST00000504761 ZKSCAN4Q969J2 545 aaPredicted RBP15.46■□□□□ 0.06
TCOF1-207ENST00000504761 ZNF668Q96K58 619 aaPredicted RBP15.46■□□□□ 0.06
TCOF1-207ENST00000504761 FAM107BQ9H098 131 aa15.46■□□□□ 0.06
TCOF1-207ENST00000504761 ZMYND12Q9H0C1 365 aa15.46■□□□□ 0.06
TCOF1-207ENST00000504761 TAL1P17542 331 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 PSMC2P35998 433 aaKnown RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 OSTNP61366 133 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 RASSF7Q02833 373 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 PEX26Q7Z412 305 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 FMNL3Q8IVF7 1028 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 DPF2Q92785 391 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 NUCKS1Q9H1E3 243 aaKnown RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 SPTLC3Q9NUV7 552 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 HACL1Q9UJ83 578 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 TOB1P50616 345 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 CEP55Q53EZ4 464 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 AGBL1Q96MI9 1066 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 NBPF3Q9H094 633 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 DISP2A7MBM2 1401 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 SRGAP2CP0DJJ0 459 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 TM4SF1P30408 202 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 PPARDQ03181 441 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 FAM160B1Q5W0V3 765 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 SLC5A4Q9NY91 659 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 NPHP3-ACAD11A0A0J9YXS1 232 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 SPDYE2BA6NHP3 402 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 SPDYE6P0CI01 402 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 PRELPP51888 382 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 FMR1Q06787 632 aaKnown RBP eCLIP15.45■□□□□ 0.061e-6■■■■□ 20.4
TCOF1-207ENST00000504761 COASYQ13057 564 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 DNAJC21Q5F1R6 531 aaKnown RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 MIS18BP1Q6P0N0 1132 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 NSUN6Q8TEA1 469 aaKnown RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 ST7Q9NRC1 585 aa15.45■□□□□ 0.06
TCOF1-207ENST00000504761 FAM217BQ9NTX9 383 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-207ENST00000504761 SMIM23A6NLE4 172 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 LMAN1P49257 510 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 USP11P51784 963 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 VAV2P52735 878 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 BAATQ14032 418 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-207ENST00000504761 KRT222Q8N1A0 295 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 PODXL2Q9NZ53 605 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 HDLBPQ00341 1268 aaKnown RBP15.44■□□□□ 0.06
TCOF1-207ENST00000504761 RPS6KA1Q15418 735 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 PADI6Q6TGC4 694 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 FAM133AQ8N9E0 248 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 SAR1BQ9Y6B6 198 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 AFPP02771 609 aaKnown RBP15.44■□□□□ 0.06
TCOF1-207ENST00000504761 GBP2P32456 591 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-207ENST00000504761 PTPAQ15257 358 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 DCUN1D2Q6PH85 259 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 ENGASEQ8NFI3 743 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 APOL6Q9BWW8 343 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 TRIM9Q9C026 710 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 AKT3Q9Y243 479 aa15.44■□□□□ 0.06
TCOF1-207ENST00000504761 CHD2O14647 1828 aaKnown RBP15.43■□□□□ 0.06
TCOF1-207ENST00000504761 TLDC2A0PJX2 215 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 HSF2BPO75031 334 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 MYCP01106 439 aaPredicted RBP15.43■□□□□ 0.06
TCOF1-207ENST00000504761 GTF2F1P35269 517 aaKnown RBP eCLIP15.43■□□□□ 0.06
TCOF1-207ENST00000504761 TNNC1P63316 161 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 IQCB1Q15051 598 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 APOBEC3HQ6NTF7 200 aaKnown RBP15.43■□□□□ 0.06
TCOF1-207ENST00000504761 C8orf74Q6P047 294 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 CERS5Q8N5B7 392 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 CCDC114Q96M63 670 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 EIF2AK1Q9BQI3 630 aaKnown RBP15.43■□□□□ 0.06
TCOF1-207ENST00000504761 PSMD2Q13200 908 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 PKN1Q16512 942 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 EARS2Q5JPH6 523 aaKnown RBP15.43■□□□□ 0.06
TCOF1-207ENST00000504761 SARM1Q6SZW1 724 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 SLC35F6Q8N357 371 aa15.43■□□□□ 0.06
TCOF1-207ENST00000504761 AGBL3Q8NEM8 1001 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms