RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ANXA13P27216 316 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 KIF23Q02241 960 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-215ENST00000496447 ARHGAP24Q8N264 748 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 BRIP1Q9BX63 1249 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 TDRD3Q9H7E2 651 aaKnown RBP14.27□□□□□ -0.13
PTPRF-215ENST00000496447 GOLGA8KD6RF30 607 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 TBC1D9BQ66K14 1250 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 PODNQ7Z5L7 613 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 SYNE4Q8N205 404 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 HOXC10Q9NYD6 342 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 PPP2R2CQ9Y2T4 447 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 NCAPD2Q15021 1401 aa14.27□□□□□ -0.13
PTPRF-215ENST00000496447 TARBP1Q13395 1621 aaKnown RBP14.27□□□□□ -0.13
PTPRF-215ENST00000496447 ZCCHC11Q5TAX3 1644 aaKnown RBP14.27□□□□□ -0.13
PTPRF-215ENST00000496447 RPAP1Q9BWH6 1393 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-215ENST00000496447 MED7O43513 233 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 CCDC13Q8IYE1 715 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 NLRP4Q96MN2 994 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 LRRC4Q9HBW1 653 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 GSTA1P08263 222 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 GSTA2P09210 222 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 MCAMP43121 646 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 BBOF1Q8ND07 529 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 SHROOM2Q13796 1616 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 OVOS2A0A0G2JMS6 1433 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 OVOS2A0A0J9YW53 1432 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 OVOS2Q6IE36 1432 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 GOLGA8SH3BPF8 625 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 SRGAP2BP0DMP2 458 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 TCP1P17987 556 aaKnown RBP14.26□□□□□ -0.13
PTPRF-215ENST00000496447 ELF1P32519 619 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 ELMSAN1Q6PJG2 1045 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 ZNF653Q96CK0 615 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 ZBED2Q9BTP6 218 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 FBXO40Q9UH90 709 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 MINPP1Q9UNW1 487 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 EEF1GP26641 437 aaKnown RBP14.26□□□□□ -0.13
PTPRF-215ENST00000496447 HNRNPH2P55795 449 aaKnown RBP14.26□□□□□ -0.13
PTPRF-215ENST00000496447 FAM83BQ5T0W9 1011 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 GDAP1L1Q96MZ0 367 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 RPF1Q9H9Y2 349 aaKnown RBP14.26□□□□□ -0.13
PTPRF-215ENST00000496447 CPSF3Q9UKF6 684 aaKnown RBP14.26□□□□□ -0.13
PTPRF-215ENST00000496447 PLA2G4BP0C869 781 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 RASSF7Q02833 373 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 RABEP2Q9H5N1 569 aa14.26□□□□□ -0.13
PTPRF-215ENST00000496447 DDIT3P35638 169 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 GARSP41250 739 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 GNGT1P63211 74 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 CTTNQ14247 550 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 CDKL2Q92772 493 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 ARHGEF1Q92888 912 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 GCNAQ96QF7 691 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 LRRN2O75325 713 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 TROVE2P10155 538 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 MAGEA9P43362 315 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 SURF1Q15526 300 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 ZNF658Q5TYW1 1059 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 SIX6OS1Q8N1H7 587 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 CD209Q9NNX6 404 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 EPN1Q9Y6I3 576 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 MAPK4P31152 587 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 NT5C2P49902 561 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 FKBP3Q00688 224 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 SATB1Q01826 763 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 DGKHQ86XP1 1220 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 ANKRD13CQ8N6S4 541 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 TRIM56Q9BRZ2 755 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 USP17L5A8MUK1 530 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 MYL1P05976 194 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 LIFRP42702 1097 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 NXNQ6DKJ4 435 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 APOBEC3FQ8IUX4 373 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 SMYD4Q8IYR2 804 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 EMILIN3Q9NT22 766 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 PASKQ96RG2 1323 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 PEX19P40855 299 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 NFX1Q12986 1120 aaKnown RBP14.25□□□□□ -0.13
PTPRF-215ENST00000496447 MAN2A1Q16706 1144 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 DSTYKQ6XUX3 929 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 CAPS2Q9BXY5 557 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 NUF2Q9BZD4 464 aa14.25□□□□□ -0.13
PTPRF-215ENST00000496447 RNF40O75150 1001 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 PKP1Q13835 747 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 ZKSCAN8Q15776 578 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 STXBP2Q15833 593 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 PPP1R2P3Q6NXS1 205 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 MMS22LQ6ZRQ5 1243 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 CATSPER4Q7RTX7 472 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 RNF10Q8N5U6 811 aaKnown RBP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 SGK1O00141 431 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 S100BP04271 92 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 YWHAGP61981 247 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 SEPT2Q15019 361 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 NAA35Q5VZE5 725 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 CCNYQ8ND76 341 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 GBP5Q96PP8 586 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 MSTO1Q9BUK6 570 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 FEM1BQ9UK73 627 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms