RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030	MSC	O60682	206 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	ADAMTS4	O75173	837 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	FAM86B2	P0C5J1	330 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	TXN	P10599	105 aa	Known RBP	13.56	□□□□□ -0.24
APTX-233	ENST00000496030	CIITA	P33076	1130 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	KRT2	P35908	639 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	LY6K	Q17RY6	165 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	KRT25	Q7Z3Z0	450 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	HSCB	Q8IWL3	235 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	TBCK	Q8TEA7	893 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.56	□□□□□ -0.24
APTX-233	ENST00000496030	COPS5	Q92905	334 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	MXRA8	Q9BRK3	442 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	UPF3A	Q9H1J1	476 aa	Known RBP	13.56	□□□□□ -0.24
APTX-233	ENST00000496030	ZNF576	Q9H609	170 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	JADE2	Q9NQC1	790 aa		13.56	□□□□□ -0.24
APTX-233	ENST00000496030	MYADML2	A6NDP7	307 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	KIF28P	B7ZC32	967 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	ATP9A	O75110	1047 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	PGK1	P00558	417 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	TGFB3	P10600	412 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	RARB	P10826	455 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	USP11	P51784	963 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	GJA9	P57773	515 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	ARHGAP1	Q07960	439 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	TRIM29	Q14134	588 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	CEP55	Q53EZ4	464 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.55	□□□□□ -0.24
APTX-233	ENST00000496030	KLHDC9	Q8NEP7	349 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	FERMT2	Q96AC1	680 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	LENG9	Q96B70	501 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	GPRASP2	Q96D09	838 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	NECAB3	Q96P71	396 aa	Predicted RBP	13.55	□□□□□ -0.24
APTX-233	ENST00000496030	UHRF1	Q96T88	793 aa	Predicted RBP	13.55	□□□□□ -0.24
APTX-233	ENST00000496030	EHMT1	Q9H9B1	1298 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	FOXD4L1	Q9NU39	408 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	THEG	Q9P2T0	379 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030		Q9Y3F1	56 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	SYNRG	Q9UMZ2	1314 aa		13.55	□□□□□ -0.24
APTX-233	ENST00000496030	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	KBTBD13	C9JR72	458 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	DYNC1LI2	O43237	492 aa	Predicted RBP	13.54	□□□□□ -0.24
APTX-233	ENST00000496030	FIBP	O43427	364 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	MYCN	P04198	464 aa	Predicted RBP	13.54	□□□□□ -0.24
APTX-233	ENST00000496030	AR	P10275	920 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	CYP3A7	P24462	503 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	U2AF2	P26368	475 aa	Known RBP eCLIP	13.54	□□□□□ -0.24	9e-15	■■■■■ 42.9
APTX-233	ENST00000496030	TLE2	Q04725	743 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	TTLL4	Q14679	1199 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	NONO	Q15233	471 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
APTX-233	ENST00000496030	LRRC41	Q15345	812 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	INF2	Q27J81	1249 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	LARP1B	Q659C4	914 aa	Known RBP	13.54	□□□□□ -0.24
APTX-233	ENST00000496030	PIK3AP1	Q6ZUJ8	805 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	NIPA1	Q7RTP0	329 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	MBOAT7	Q96N66	472 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	FOXP1	Q9H334	677 aa	Predicted RBP	13.54	□□□□□ -0.24
APTX-233	ENST00000496030	XPNPEP3	Q9NQH7	507 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	KCNH7	Q9NS40	1196 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	TELO2	Q9Y4R8	837 aa		13.54	□□□□□ -0.24
APTX-233	ENST00000496030	PIEZO1	Q92508	2521 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	DOCK5	Q9H7D0	1870 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	CCDC194	A0A1B0GVG4	234 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	WNT7A	O00755	349 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	NKRF	O15226	690 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
APTX-233	ENST00000496030	KCNA2	P16389	499 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	UBA1	P22314	1058 aa	Known RBP	13.53	□□□□□ -0.24
APTX-233	ENST00000496030	GNPTAB	Q3T906	1256 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	MYSM1	Q5VVJ2	828 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	KCNV1	Q6PIU1	500 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	TLK2	Q86UE8	772 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	NLRX1	Q86UT6	975 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	ARRDC4	Q8NCT1	418 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	SENP7	Q9BQF6	1050 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	PRDM12	Q9H4Q4	367 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	KIF3A	Q9Y496	699 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030	MRVI1	Q9Y6F6	885 aa		13.53	□□□□□ -0.24
APTX-233	ENST00000496030		A6NJR5	290 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	MAFG	O15525	162 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	DHX15	O43143	795 aa	Known RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	TDP2	O95551	362 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	SYT1	P21579	422 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	CST5	P28325	142 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	MRPS5	P82675	430 aa	Known RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	BEX3	Q00994	111 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	ITGB3BP	Q13352	177 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	MTMR1	Q13613	665 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	ADGRE1	Q14246	886 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	SAFB	Q15424	915 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	CCDC85B	Q15834	202 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	CELF3	Q5SZQ8	465 aa	Known RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	EMID1	Q96A84	441 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	TIFA	Q96CG3	184 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	AGO4	Q9HCK5	861 aa	Known RBP	13.52	□□□□□ -0.25
APTX-233	ENST00000496030	BRMS1	Q9HCU9	246 aa		13.52	□□□□□ -0.25
APTX-233	ENST00000496030	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-233	ENST00000496030	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-233	ENST00000496030	GGPS1	O95749	300 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	GH1	P01241	217 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	ZNF76	P36508	570 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms