RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 USP11P51784 963 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 KIF11P52732 1056 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 CXCL9Q07325 125 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 EHHADHQ08426 723 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 PTPN21Q16825 1174 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 DCAF8Q5TAQ9 597 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 ANKRD40Q6AI12 368 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 CHADLQ6NUI6 762 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 USP17L1Q7RTZ2 530 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 SPATS2Q86XZ4 545 aaKnown RBP12.69□□□□□ -0.38
RFC4-214ENST00000494047 SNX29Q8TEQ0 813 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 EHD4Q9H223 541 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 ZSWIM4Q9H7M6 989 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 SIK3Q9Y2K2 1263 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 COL4A3BPQ9Y5P4 624 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 BAZ2BQ9UIF8 2168 aaKnown RBP12.69□□□□□ -0.38
RFC4-214ENST00000494047 COL4A5P29400 1685 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 GFPT2O94808 682 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 SERPING1P05155 500 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 KLRK1P26718 216 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 TECP42680 631 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 PMS1P54277 932 aaKnown RBP12.69□□□□□ -0.38
RFC4-214ENST00000494047 STK4Q13043 487 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 CFAP221Q4G0U5 840 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 USP50Q70EL3 339 aaPredicted RBP12.69□□□□□ -0.38
RFC4-214ENST00000494047 KIAA0895Q8NCT3 520 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 C1orf131Q8NDD1 294 aaKnown RBP12.69□□□□□ -0.38
RFC4-214ENST00000494047 RASGRP4Q8TDF6 673 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 COA1Q9GZY4 146 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 MTMR4Q9NYA4 1195 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 MAPK8IP1Q9UQF2 711 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 PCDHA13Q9Y5I0 950 aa12.69□□□□□ -0.38
RFC4-214ENST00000494047 MARCH6O60337 910 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 ATP1A1P05023 1023 aaKnown RBP12.68□□□□□ -0.38
RFC4-214ENST00000494047 RPS12P25398 132 aaKnown RBP12.68□□□□□ -0.38
RFC4-214ENST00000494047 EPS15P42566 896 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 TNNT3P45378 269 aaPredicted RBP12.68□□□□□ -0.38
RFC4-214ENST00000494047 HNRNPH2P55795 449 aaKnown RBP12.68□□□□□ -0.38
RFC4-214ENST00000494047 FAM26FQ5R3K3 315 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 PODNQ7Z5L7 613 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 SLC51AQ86UW1 340 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 VPS36Q86VN1 386 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 MAPKAPK5Q8IW41 473 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 FAM76AQ8TAV0 307 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 CAVIN3Q969G5 261 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 DYNLL2Q96FJ2 89 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 CEP95Q96GE4 821 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 ST7Q9NRC1 585 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 FBXL5Q9UKA1 691 aa12.68□□□□□ -0.38
RFC4-214ENST00000494047 LOXHD1Q8IVV2 1947 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 IGKV6D-41A0A0C4DH26 115 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 GOLGA6BA6NDN3 693 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 SRRM3A6NNA2 597 aaPredicted RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 RIMBP2O15034 1052 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 ZBTB5O15062 677 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 ECE2O60344 883 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 NPM3O75607 178 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 FOSP01100 380 aaPredicted RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 EPB41P11171 864 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 CDC25AP30304 524 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 SCNN1DP51172 638 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 GABPAQ06546 454 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 GRB10Q13322 594 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 PPP2R5EQ16537 467 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 CCDC40Q4G0X9 1142 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 MFSD14BQ5SR56 506 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 SFMBT2Q5VUG0 894 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 NCAPH2Q6IBW4 605 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 PDXDC1Q6P996 788 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 CCNI2Q6ZMN8 369 aaPredicted RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 LRRC55Q6ZSA7 311 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 POTEDQ86YR6 584 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 ZC3H3Q8IXZ2 948 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 IFT20Q8IY31 132 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 NOA1Q8NC60 698 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 DCAF4Q8WV16 495 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 PIGSQ96S52 555 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 MMTAG2Q9BU76 263 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 DHX36Q9H2U1 1008 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 METTL14Q9HCE5 456 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 ADARB2Q9NS39 739 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 BLOC1S4Q9NUP1 217 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 GPRC5DQ9NZD1 345 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 STIM2Q9P246 746 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 DDX25Q9UHL0 483 aaKnown RBP12.67□□□□□ -0.38
RFC4-214ENST00000494047 HPCAL4Q9UM19 191 aa12.67□□□□□ -0.38
RFC4-214ENST00000494047 MYH7BA7E2Y1 1941 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 ATXN2Q99700 1313 aaKnown RBP12.66□□□□□ -0.38
RFC4-214ENST00000494047 CYP3A7-CYP3A51PA0A087WV96 503 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 YDJCA8MPS7 323 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 PP2D1A8MPX8 630 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 H3BQF6 201 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 SLC16A3O15427 465 aaKnown RBP12.66□□□□□ -0.38
RFC4-214ENST00000494047 RNF40O75150 1001 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 MUTP22033 750 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 CYP3A7P24462 503 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 TXKP42681 527 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 MAGEA1P43355 309 aa12.66□□□□□ -0.38
RFC4-214ENST00000494047 CLK2P49760 499 aaKnown RBP12.66□□□□□ -0.38
RFC4-214ENST00000494047 RHBDL3P58872 404 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms