RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TOX2Q96NM4 488 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 BRMS1Q9HCU9 246 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ZMYND8Q9ULU4 1186 aaPredicted RBP18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 GRIN2DO15399 1336 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 DOCK5Q9H7D0 1870 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 IGLV3-22A0A075B6J6 115 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 DCDC2CA8MYV0 355 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SYN1P17600 705 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CIITAP33076 1130 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KRT2P35908 639 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 USP11P51784 963 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SETQ01105 290 aaPredicted RBP18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SP4Q02446 784 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 NONOQ15233 471 aaKnown RBP eCLIP18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 OXER1Q8TDS5 423 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KATNAL1Q9BW62 490 aa18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 AGO4Q9HCK5 861 aaKnown RBP18.52■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 NFASCO94856 1347 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 CCDC194A0A1B0GVG4 234 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TLR3O15455 904 aaKnown RBP18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PPFIA4O75335 1185 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 F2P00734 622 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 MMP1P03956 469 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 CLTBP09497 229 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 ZNF286BP0CG31 522 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 KRT40Q6A162 431 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 FAM126BQ8IXS8 530 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 FAM184AQ8NB25 1140 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 KAT2BQ92831 832 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 C8orf76Q96K31 380 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 GPR20Q99678 358 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SDF4Q9BRK5 362 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PRDM5Q9NQX1 630 aaPredicted RBP18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PDLIM7Q9NR12 457 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PRKAG2Q9UGJ0 569 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SCN10AQ9Y5Y9 1956 aa18.51■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PDE4DIPQ5VU43 2346 aa18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 EDIL3O43854 480 aa18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 NBPF20Q3BBV1 942 aa18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PRR16Q569H4 304 aa18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 NFRKBQ6P4R8 1299 aa18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 JPH1Q9HDC5 661 aaPredicted RBP18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TELO2Q9Y4R8 837 aa18.5■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 LGALS2P05162 132 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PSEN2P49810 448 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 CHMP4BP1P59074 171 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 FAAP100Q0VG06 881 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 NR5A1Q13285 461 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 ITGB3BPQ13352 177 aaPredicted RBP18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 MFSD10Q14728 455 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 INF2Q27J81 1249 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 FAM47CQ5HY64 1035 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PIK3AP1Q6ZUJ8 805 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 DIS3L2Q8IYB7 885 aaKnown RBP18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 C16orf70Q9BSU1 422 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SLC9A2Q9UBY0 812 aa18.49■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 HAS3O00219 553 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 IPO5O00410 1097 aaKnown RBP18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 CD4P01730 458 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 GUCY1B3Q02153 619 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PTPN11Q06124 597 aaPredicted RBP18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SAFBQ15424 915 aaKnown RBP eCLIP18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 MOXD1Q6UVY6 613 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SH3RF1Q7Z6J0 888 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SEPT1Q8WYJ6 367 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TNFRSF25Q93038 417 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 LENG9Q96B70 501 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 ZNF577Q9BSK1 485 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TMEM39AQ9NV64 488 aa18.48■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 CYP3A7-CYP3A51PA0A087WV96 503 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TRIM43BA6NCK2 446 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 BTBD18B2RXH4 712 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 B4GALT4O60513 344 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TDP2O95551 362 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 CYP3A7P24462 503 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TCF7P36402 384 aaPredicted RBP18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 KIAA0753Q2KHM9 967 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 LETM2Q2VYF4 491 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 Q4G0T1 1027 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 EARS2Q5JPH6 523 aaKnown RBP18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 UTP14CQ5TAP6 766 aaKnown RBP18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 NEK8Q86SG6 692 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 SESTD1Q86VW0 696 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PPP1R13LQ8WUF5 828 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TRIM43Q96BQ3 446 aaPredicted RBP18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 KIF3AQ9Y496 699 aa18.47■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 LTBP2Q14767 1821 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 GSTTP1A0A1W2PQM5 241 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 H3BRB1 525 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 DDX39AO00148 427 aaKnown RBP18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 KIAA0355O15063 1070 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 ACTR2P61160 394 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TRIM50Q86XT4 487 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 FBXO18Q8NFZ0 1043 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 MBOAT7Q96N66 472 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 UIMC1Q96RL1 719 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TRPV6Q9H1D0 765 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TUT1Q9H6E5 874 aaKnown RBP18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TBC1D22BQ9NU19 505 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 PCDH10Q9P2E7 1040 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms