RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 JADE2Q9NQC1 790 aa20.75■□□□□ 0.91
COL9A3-214ENST00000490398 MYH7BA7E2Y1 1941 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 LARGE1O95461 756 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 LGALS2P05162 132 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 ARP10275 920 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 PTPN11Q06124 597 aaPredicted RBP20.74■□□□□ 0.91
COL9A3-214ENST00000490398 NEDD9Q14511 834 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 TRIM50Q86XT4 487 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 SENP7Q9BQF6 1050 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 MXRA8Q9BRK3 442 aa20.74■□□□□ 0.91
COL9A3-214ENST00000490398 DOCK5Q9H7D0 1870 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 ESYT2A0FGR8 921 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 FOSP01100 380 aaPredicted RBP20.73■□□□□ 0.91
COL9A3-214ENST00000490398 SREBF1P36956 1147 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 AKAP17AQ02040 695 aaKnown RBP20.73■□□□□ 0.91
COL9A3-214ENST00000490398 MTMR1Q13613 665 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 TMEM240Q5SV17 173 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 SESTD1Q86VW0 696 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 CRYGNQ8WXF5 182 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 DHX38Q92620 1227 aaKnown RBP20.73■□□□□ 0.91
COL9A3-214ENST00000490398 WNT8BQ93098 351 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 UIMC1Q96RL1 719 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 GTF2IRD1Q9UHL9 959 aa20.73■□□□□ 0.91
COL9A3-214ENST00000490398 EDIL3O43854 480 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 CTDNEP1O95476 244 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 SSRP1Q08945 709 aaKnown RBP20.72■□□□□ 0.91
COL9A3-214ENST00000490398 AP3B2Q13367 1082 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 PTGISQ16647 500 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 UTP14CQ5TAP6 766 aaKnown RBP20.72■□□□□ 0.91
COL9A3-214ENST00000490398 ZNF365Q70YC5 407 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 Q7L0L9 218 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 TMEM199Q8N511 208 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 C6orf50Q9HD87 102 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 KCNH7Q9NS40 1196 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 CDH23Q9H251 3354 aa20.72■□□□□ 0.91
COL9A3-214ENST00000490398 GSTTP1A0A1W2PQM5 241 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 FAM86B1E9PN63 330 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 NOP56O00567 594 aaKnown RBP20.71■□□□□ 0.91
COL9A3-214ENST00000490398 PFKFB2O60825 505 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 FAM86B2P0C5J1 330 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 SUPT20HL2P0C7V6 817 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 ARHGAP4P98171 946 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 PPIGQ13427 754 aaKnown RBP eCLIP20.71■□□□□ 0.917e-33■■■□□ 14.9
COL9A3-214ENST00000490398 FAM109BQ6ICB4 259 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-214ENST00000490398 C7orf31Q8N865 590 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 NECAB1Q8N987 351 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 EHMT1Q9H9B1 1298 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 IL23AQ9NPF7 189 aa20.71■□□□□ 0.91
COL9A3-214ENST00000490398 H3BRB1 525 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 MEIS1O00470 390 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 CPLX1O14810 134 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 ITGB3BPQ13352 177 aaPredicted RBP20.7■□□□□ 0.9
COL9A3-214ENST00000490398 ME3Q16798 604 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 CEP55Q53EZ4 464 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 TEX2Q8IWB9 1127 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 REXO1Q8N1G1 1221 aaKnown RBP20.7■□□□□ 0.9
COL9A3-214ENST00000490398 RNPC3Q96LT9 517 aaKnown RBP20.7■□□□□ 0.9
COL9A3-214ENST00000490398 KATNAL1Q9BW62 490 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 GLT8D2Q9H1C3 349 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 TUT1Q9H6E5 874 aaKnown RBP20.7■□□□□ 0.9
COL9A3-214ENST00000490398 AGO4Q9HCK5 861 aaKnown RBP20.7■□□□□ 0.9
COL9A3-214ENST00000490398 GJB4Q9NTQ9 266 aa20.7■□□□□ 0.9
COL9A3-214ENST00000490398 IGLV3-22A0A075B6J6 115 aa20.69■□□□□ 0.9
COL9A3-214ENST00000490398 NEK4P51957 841 aa20.69■□□□□ 0.9
COL9A3-214ENST00000490398 NPY5RQ15761 445 aa20.69■□□□□ 0.9
COL9A3-214ENST00000490398 CCDC12Q8WUD4 166 aaPredicted RBP20.69■□□□□ 0.9
COL9A3-214ENST00000490398 CDHR1Q96JP9 859 aa20.69■□□□□ 0.9
COL9A3-214ENST00000490398 SLKQ9H2G2 1235 aaPredicted RBP20.69■□□□□ 0.9
COL9A3-214ENST00000490398 CXXC1Q9P0U4 656 aaPredicted RBP20.69■□□□□ 0.9
COL9A3-214ENST00000490398 NOD1Q9Y239 953 aa20.69■□□□□ 0.9
COL9A3-214ENST00000490398 DEXIO95424 95 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 SMIM10L2AP0DMW4 78 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 SMIM10L2BP0DMW5 78 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 TCF7P36402 384 aaPredicted RBP20.68■□□□□ 0.9
COL9A3-214ENST00000490398 ST3GAL1Q11201 340 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 GPNMBQ14956 572 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 TRIM71Q2Q1W2 868 aaKnown RBP20.68■□□□□ 0.9
COL9A3-214ENST00000490398 RASIP1Q5U651 963 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 TRIM22Q8IYM9 498 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 PCYT2Q99447 389 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 KIF2CQ99661 725 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 KCNJ14Q9UNX9 436 aa20.68■□□□□ 0.9
COL9A3-214ENST00000490398 GRXCR1A8MXD5 290 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 CYP3A4P08684 503 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 IQCF3P0C7M6 154 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 GNA11P29992 359 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 NLRP5P59047 1200 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 DEFB128Q7Z7B8 93 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 GIMAP8Q8ND71 665 aaPredicted RBP20.67■□□□□ 0.9
COL9A3-214ENST00000490398 CCDC148Q8NFR7 591 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 RNPEPQ9H4A4 650 aa20.67■□□□□ 0.9
COL9A3-214ENST00000490398 MAFGO15525 162 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 FDPSP14324 419 aaKnown RBP20.66■□□□□ 0.9
COL9A3-214ENST00000490398 HOXC8P31273 242 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 ZNF76P36508 570 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 TRAF7Q6Q0C0 670 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 OTOP2Q7RTS6 562 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 PLA2G4DQ86XP0 818 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 SEPT1Q8WYJ6 367 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 JPH1Q9HDC5 661 aaPredicted RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms