RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZSWIM5Q9P217 1185 aa16.24■□□□□ 0.19
VARS-227ENST00000489979 RALGAPA2Q2PPJ7 1873 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.23■□□□□ 0.19
VARS-227ENST00000489979 POTEB3A0JP26 581 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 H3BRB1 525 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 PPP1R11O60927 126 aaPredicted RBP16.23■□□□□ 0.19
VARS-227ENST00000489979 SMIM10L2AP0DMW4 78 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 SMIM10L2BP0DMW5 78 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 SDSP20132 328 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 HOXC8P31273 242 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 ZP2Q05996 745 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 POTEBQ6S5H4 581 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 RNPEPQ9H4A4 650 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 TUT1Q9H6E5 874 aaKnown RBP16.23■□□□□ 0.19
VARS-227ENST00000489979 CLDND1Q9NY35 253 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 MAP3K20Q9NYL2 800 aaKnown RBP16.23■□□□□ 0.19
VARS-227ENST00000489979 FAM50BQ9Y247 325 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 ATG2AQ2TAZ0 1938 aa16.23■□□□□ 0.19
VARS-227ENST00000489979 COL4A6Q14031 1691 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 LGALS2P05162 132 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 TGFB3P10600 412 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 CCND2P30279 289 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 MRE11P49959 708 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 COL19A1Q14993 1142 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 IFIH1Q9BYX4 1025 aaKnown RBP16.22■□□□□ 0.19
VARS-227ENST00000489979 BCAS3Q9H6U6 928 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 PRKAG3Q9UGI9 489 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 PCDHA1Q9Y5I3 950 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 WDFY4Q6ZS81 3184 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 C5orf42Q9H799 3197 aa16.22■□□□□ 0.19
VARS-227ENST00000489979 BAZ2BQ9UIF8 2168 aaKnown RBP16.21■□□□□ 0.19
VARS-227ENST00000489979 DOCK5Q9H7D0 1870 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 C19orf67A6NJJ6 358 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 ZBTB5O15062 677 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 CAND2O75155 1236 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 CWC27Q6UX04 472 aaKnown RBP16.21■□□□□ 0.19
VARS-227ENST00000489979 RPAINQ86UA6 219 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 ADHFE1Q8IWW8 467 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 MTMR8Q96EF0 704 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 FBXL18Q96ME1 805 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 LNPKQ9C0E8 428 aa16.21■□□□□ 0.19
VARS-227ENST00000489979 KAT6AQ92794 2004 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 KLRF2D3W0D1 207 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 GCOM1H8Y6P7 765 aaPredicted RBP16.2■□□□□ 0.18
VARS-227ENST00000489979 NOP56O00567 594 aaKnown RBP16.2■□□□□ 0.18
VARS-227ENST00000489979 POLR2MP0CAP2 368 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 CTNNB1P35222 781 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 LTBRP36941 435 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 NHLH1Q02575 133 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 IFIT1BQ5T764 474 aaKnown RBP16.2■□□□□ 0.18
VARS-227ENST00000489979 FCHSD1Q86WN1 690 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 FIBCD1Q8N539 461 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 SAMD3Q8N6K7 520 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 APBB2Q92870 758 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 IL17RAQ96F46 866 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 UBAC1Q9BSL1 405 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 SETD4Q9NVD3 440 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 MAD2L2Q9UI95 211 aa16.2■□□□□ 0.18
VARS-227ENST00000489979 ZNF318Q5VUA4 2279 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 GNAT1P11488 350 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 HDAC1Q13547 482 aaPredicted RBP16.19■□□□□ 0.18
VARS-227ENST00000489979 CLUL1Q15846 466 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 IMMTQ16891 758 aaKnown RBP16.19■□□□□ 0.18
VARS-227ENST00000489979 HOMER1Q86YM7 354 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 USP26Q9BXU7 913 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 KRT23Q9C075 422 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 KCNH6Q9H252 994 aa16.19■□□□□ 0.18
VARS-227ENST00000489979 PALM3A6NDB9 673 aaPredicted RBP16.18■□□□□ 0.18
VARS-227ENST00000489979 NCK2O43639 380 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 IRS1P35568 1242 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 DLX2Q07687 328 aaPredicted RBP16.18■□□□□ 0.18
VARS-227ENST00000489979 CTC1Q2NKJ3 1217 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 METTL7BQ6UX53 244 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 HFE2Q6ZVN8 426 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 CYFIP1Q7L576 1253 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 TRIM50Q86XT4 487 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 DSCC1Q9BVC3 393 aa16.18■□□□□ 0.18
VARS-227ENST00000489979 UPF3BQ9BZI7 483 aaKnown RBP16.18■□□□□ 0.18
VARS-227ENST00000489979 TRIOO75962 3097 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 C5orf67F2Z3F1 127 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 GRM6O15303 877 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 RB1P06400 928 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 LINC00271P0C7V0 271 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 BMPR1AP36894 532 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 MRPS9P82933 396 aaKnown RBP16.17■□□□□ 0.18
VARS-227ENST00000489979 ARHGAP4P98171 946 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 HYAL1Q12794 435 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 NEDD9Q14511 834 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 SEC23AQ15436 765 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 SMAD2Q15796 467 aaKnown RBP16.17■□□□□ 0.18
VARS-227ENST00000489979 SLC35G1Q2M3R5 365 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 GNPTABQ3T906 1256 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 FAM26DQ5JW98 314 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 PIGSQ96S52 555 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 GPR20Q99678 358 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 C11orf84Q9BUA3 381 aaPredicted RBP16.17■□□□□ 0.18
VARS-227ENST00000489979 LMAN2LQ9H0V9 348 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 CNNM2Q9H8M5 875 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 DIAPH3Q9NSV4 1193 aa16.17■□□□□ 0.18
VARS-227ENST00000489979 RTEL1Q9NZ71 1219 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms