RNA–Protein interactions for RNA: ENST00000489772.5

GGA1-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 1, human

TSL 2

Gene GGA1, Length 1,384 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GGA1-222	ENST00000489772	C7orf31	Q8N865	590 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	KAT2B	Q92831	832 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	PGBD1	Q96JS3	809 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	HIPK3	Q9H422	1215 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	JADE2	Q9NQC1	790 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	SH3GLB2	Q9NR46	395 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	TMEM260	Q9NX78	707 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	NOD1	Q9Y239	953 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	UBIAD1	Q9Y5Z9	338 aa		12.67	□□□□□ -0.38
GGA1-222	ENST00000489772	PFKFB2	O60825	505 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	DEXI	O95424	95 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	F2	P00734	622 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	ZNF76	P36508	570 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	SREBF1	P36956	1147 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	PSEN2	P49810	448 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	MFSD10	Q14728	455 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	CEP55	Q53EZ4	464 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	SESTD1	Q86VW0	696 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	PPP1R12C	Q9BZL4	782 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	BCAS3	Q9H6U6	928 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	VPS54	Q9P1Q0	977 aa		12.66	□□□□□ -0.38
GGA1-222	ENST00000489772	KCNA2	P16389	499 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	NLRP5	P59047	1200 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	ARHGAP4	P98171	946 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	PPIG	Q13427	754 aa	Known RBP eCLIP	12.65	□□□□□ -0.38	2e-7	■■□□□ 12.7
GGA1-222	ENST00000489772	KIAA0753	Q2KHM9	967 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	LRIT3	Q3SXY7	679 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	PPP1R13L	Q8WUF5	828 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	GPR20	Q99678	358 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	MXRA8	Q9BRK3	442 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	C16orf70	Q9BSU1	422 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	ALG1	Q9BT22	464 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	NOC4L	Q9BVI4	516 aa	Known RBP	12.65	□□□□□ -0.38
GGA1-222	ENST00000489772	PKD2L1	Q9P0L9	805 aa		12.65	□□□□□ -0.38
GGA1-222	ENST00000489772		H3BRB1	525 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	HAS3	O00219	553 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	ATP9A	O75110	1047 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	GABBR2	O75899	941 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	CYP2C9	P11712	490 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	CSF2RA	P15509	400 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	CYP2C18	P33260	490 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	SP4	Q02446	784 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	PTGIS	Q16647	500 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	FAM177A1	Q8N128	213 aa	Predicted RBP	12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	CYP2W1	Q8TAV3	490 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	TUT1	Q9H6E5	874 aa	Known RBP	12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	KCNH7	Q9NS40	1196 aa		12.64	□□□□□ -0.39
GGA1-222	ENST00000489772	MEIS1	O00470	390 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	LGALS2	P05162	132 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	CYP3A4	P08684	503 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	XBP1	P17861	261 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	SHH	Q15465	462 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	ME3	Q16798	604 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	GALNT17	Q6IS24	598 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	NIPA1	Q7RTP0	329 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	SDF4	Q9BRK5	362 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	C22orf23	Q9BZE7	217 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	AGO4	Q9HCK5	861 aa	Known RBP	12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	JPH1	Q9HDC5	661 aa	Predicted RBP	12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	HDAC6	Q9UBN7	1215 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	GTF2IRD1	Q9UHL9	959 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	ZNF215	Q9UL58	517 aa	Predicted RBP	12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	PCDHA4	Q9UN74	947 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	STK36	Q9NRP7	1315 aa		12.63	□□□□□ -0.39
GGA1-222	ENST00000489772	FAM86B1	E9PN63	330 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	FAM86B2	P0C5J1	330 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	AR	P10275	920 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	EPHB4	P54760	987 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	CCL23	P55773	120 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	BFSP2	Q13515	415 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	C9orf50	Q5SZB4	431 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	UTP14C	Q5TAP6	766 aa	Known RBP	12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	GDF6	Q6KF10	455 aa	Predicted RBP	12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	PSRC1	Q6PGN9	363 aa	Predicted RBP	12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	CCDC155	Q8N6L0	562 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	NECAB1	Q8N987	351 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	RETREG2	Q8NC44	543 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	RASGRP4	Q8TDF6	673 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	CRYGN	Q8WXF5	182 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	SEPT1	Q8WYJ6	367 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	WASF1	Q92558	559 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	GTF3C6	Q969F1	213 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	RNPC3	Q96LT9	517 aa	Known RBP	12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	UPF2	Q9HAU5	1272 aa	Known RBP	12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	SZT2	Q5T011	3432 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	UMODL1	Q5DID0	1318 aa		12.62	□□□□□ -0.39
GGA1-222	ENST00000489772	SOX1	O00570	391 aa	Predicted RBP	12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	ADAMTS3	O15072	1205 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	TCF7	P36402	384 aa	Predicted RBP	12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	SET	Q01105	290 aa	Predicted RBP	12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	PLA2G4D	Q86XP0	818 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	RPUSD2	Q8IZ73	545 aa	Known RBP	12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	BLID	Q8IZY5	108 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	CAGE1	Q8TC20	777 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	AIFM3	Q96NN9	605 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	WNT8A	Q9H1J5	351 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	IL23A	Q9NPF7	189 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	ORC3	Q9UBD5	711 aa	Predicted RBP	12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	SLC9A2	Q9UBY0	812 aa		12.61	□□□□□ -0.39
GGA1-222	ENST00000489772	LIMCH1	Q9UPQ0	1083 aa		12.61	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms