RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ICAM3P32942 547 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 THPOP40225 353 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 SART3Q15020 963 aaKnown RBP14.34□□□□□ -0.11
CPSF3-204ENST00000489403 FAM117BQ6P1L5 589 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.34□□□□□ -0.11
CPSF3-204ENST00000489403 CATIPQ7Z7H3 387 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 IGDCC4Q8TDY8 1250 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 PIBF1Q8WXW3 757 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 INPP4AQ96PE3 977 aaPredicted RBP14.34□□□□□ -0.11
CPSF3-204ENST00000489403 TGS1Q96RS0 853 aaKnown RBP14.34□□□□□ -0.11
CPSF3-204ENST00000489403 EMSYQ7Z589 1322 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 RSPH10B2B2RC85 870 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 H3BRB1 525 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 TREHO43280 583 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 STAM2O75886 525 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 RSPH10BP0C881 870 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 SMIM10L2AP0DMW4 78 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 SMIM10L2BP0DMW5 78 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 ERVK-21P61565 698 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 GNPTABQ3T906 1256 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 MB21D2Q8IYB1 491 aaPredicted RBP14.33□□□□□ -0.12
CPSF3-204ENST00000489403 DBF4BQ8NFT6 615 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 ATP6V0A1Q93050 837 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 HLA-CQ95604 372 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 RNPEPQ9H4A4 650 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 TUT1Q9H6E5 874 aaKnown RBP14.33□□□□□ -0.12
CPSF3-204ENST00000489403 SUGCTQ9HAC7 445 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 LMCD1Q9NZU5 365 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 MTUS1Q9ULD2 1270 aa14.33□□□□□ -0.12
CPSF3-204ENST00000489403 SPATA31C2B4DYI2 1134 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 NOP56O00567 594 aaKnown RBP14.32□□□□□ -0.12
CPSF3-204ENST00000489403 FIBPO43427 364 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 NEDD9Q14511 834 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 PLEKHG4Q58EX7 1191 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 METTL7BQ6UX53 244 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 CYFIP1Q7L576 1253 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 MYOCDQ8IZQ8 938 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 MAP4K1Q92918 833 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 GPR20Q99678 358 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 MYL10Q9BUA6 226 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 SPZ1Q9BXG8 430 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 OSBPL7Q9BZF2 842 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 LY9Q9HBG7 655 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 RTEL1Q9NZ71 1219 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 RAPGEFL1Q9UHV5 662 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 TELO2Q9Y4R8 837 aa14.32□□□□□ -0.12
CPSF3-204ENST00000489403 SUPT16HQ9Y5B9 1047 aaKnown RBP14.32□□□□□ -0.12
CPSF3-204ENST00000489403 AMHP03971 560 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 USP17L6PQ6QN14 398 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 TRIM50Q86XT4 487 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 ZNF654Q8IZM8 581 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 MAP3K14Q99558 947 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 C17orf80Q9BSJ5 609 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 USP26Q9BXU7 913 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 INSL6Q9Y581 213 aa14.31□□□□□ -0.12
CPSF3-204ENST00000489403 RBM8AQ9Y5S9 174 aaKnown RBP14.31□□□□□ -0.12
CPSF3-204ENST00000489403 MEIS2O14770 477 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 CAND2O75155 1236 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 DDAH1O94760 285 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 CTSHP09668 335 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 HTRA4P83105 476 aaPredicted RBP14.3□□□□□ -0.12
CPSF3-204ENST00000489403 PCNX4Q63HM2 1172 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 CTCFLQ8NI51 663 aaPredicted RBP14.3□□□□□ -0.12
CPSF3-204ENST00000489403 SMARCC2Q8TAQ2 1214 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 SP7Q8TDD2 431 aaPredicted RBP14.3□□□□□ -0.12
CPSF3-204ENST00000489403 RRP36Q96EU6 259 aaKnown RBP14.3□□□□□ -0.12
CPSF3-204ENST00000489403 SETD4Q9NVD3 440 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 COL4A6Q14031 1691 aa14.3□□□□□ -0.12
CPSF3-204ENST00000489403 PIK3CDO00329 1044 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 PLEKHA8P1O95397 391 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 KIF5BP33176 963 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 ADAM17P78536 824 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 SP4Q02446 784 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 COL9A3Q14050 684 aaPredicted RBP14.29□□□□□ -0.12
CPSF3-204ENST00000489403 UTP14CQ5TAP6 766 aaKnown RBP14.29□□□□□ -0.12
CPSF3-204ENST00000489403 FBXO22Q8NEZ5 403 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 SEPT8Q92599 483 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 CUL5Q93034 780 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 SENP7Q9BQF6 1050 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 ZNF215Q9UL58 517 aaPredicted RBP14.29□□□□□ -0.12
CPSF3-204ENST00000489403 NLRC5Q86WI3 1866 aa14.29□□□□□ -0.12
CPSF3-204ENST00000489403 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.28□□□□□ -0.12
CPSF3-204ENST00000489403 SH2B2O14492 632 aaPredicted RBP14.28□□□□□ -0.12
CPSF3-204ENST00000489403 PRC1O43663 620 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 GNAT1P11488 350 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 SMARCA1P28370 1054 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 ARHGAP4P98171 946 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 XRRA1Q6P2D8 792 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 CASC1Q6TDU7 716 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 NLRX1Q86UT6 975 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 SRBD1Q8N5C6 995 aaKnown RBP14.28□□□□□ -0.12
CPSF3-204ENST00000489403 LMBR1Q8WVP7 490 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 TOP1MTQ969P6 601 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 MTA3Q9BTC8 594 aa14.28□□□□□ -0.12
CPSF3-204ENST00000489403 UBE2ZQ9H832 354 aaPredicted RBP14.28□□□□□ -0.12
CPSF3-204ENST00000489403 SEC63Q9UGP8 760 aaKnown RBP14.28□□□□□ -0.12
CPSF3-204ENST00000489403 KCNA2P16389 499 aa14.27□□□□□ -0.13
CPSF3-204ENST00000489403 RXRAP19793 462 aa14.27□□□□□ -0.13
CPSF3-204ENST00000489403 IRX6P78412 446 aaPredicted RBP14.27□□□□□ -0.13
CPSF3-204ENST00000489403 FAM26DQ5JW98 314 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms