RNA–Protein interactions for RNA: ENST00000488596.5

CD46-215, Transcript of CD46 molecule, human

TSL 3

Gene CD46, Length 872 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD46-215	ENST00000488596	ZSWIM3	Q96MP5	696 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	SLITRK6	Q9H5Y7	841 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	SHROOM4	Q9ULL8	1493 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	C9orf118	A6NHY6	69 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	GPR42	O15529	346 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	DIAPH1	O60610	1272 aa	Known RBP	4.87	□□□□□ -1.63
CD46-215	ENST00000488596	CYP1A1	P04798	512 aa	Predicted RBP	4.87	□□□□□ -1.63
CD46-215	ENST00000488596	ZNF143	P52747	638 aa	Predicted RBP	4.87	□□□□□ -1.63
CD46-215	ENST00000488596	NKX3-2	P78367	333 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	IFRD2	Q12894	506 aa	Predicted RBP	4.87	□□□□□ -1.63
CD46-215	ENST00000488596	RASGRF1	Q13972	1273 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	MTERF2	Q49AM1	385 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	ARRDC4	Q8NCT1	418 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	BTN2A2	Q8WVV5	523 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	YTHDC1	Q96MU7	727 aa	Known RBP	4.87	□□□□□ -1.63
CD46-215	ENST00000488596	CD248	Q9HCU0	757 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	WASF3	Q9UPY6	502 aa		4.87	□□□□□ -1.63
CD46-215	ENST00000488596	TACR2	P21452	398 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	GDF5	P43026	501 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	RBM10	P98175	930 aa	Known RBP	4.86	□□□□□ -1.63
CD46-215	ENST00000488596	SF1	Q15637	639 aa	Known RBP	4.86	□□□□□ -1.63
CD46-215	ENST00000488596	SLC10A6	Q3KNW5	377 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	LRP10	Q7Z4F1	713 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	NOP9	Q86U38	636 aa	Known RBP	4.86	□□□□□ -1.63
CD46-215	ENST00000488596	KREMEN2	Q8NCW0	462 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	RCBTB1	Q8NDN9	531 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	DIO2	Q92813	273 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	TMEM169	Q96HH4	297 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	PTPN18	Q99952	460 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	YIPF4	Q9BSR8	244 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	KANSL2	Q9H9L4	492 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	NGRN	Q9NPE2	291 aa	Known RBP	4.86	□□□□□ -1.63
CD46-215	ENST00000488596	LRP2BP	Q9P2M1	347 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	ZNF652	Q9Y2D9	606 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	TSC22D4	Q9Y3Q8	395 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	KDM2B	Q8NHM5	1336 aa		4.86	□□□□□ -1.63
CD46-215	ENST00000488596	TCRBV5S2	A0A599	114 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	NPEPPSL1	A6NEC2	478 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	CYR61	O00622	381 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	LRG1	P02750	347 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	SLPI	P03973	132 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	ITGAV	P06756	1048 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	LCP1	P13796	627 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	HOXC12	P31275	282 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	ECI1	P42126	302 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	GTF2A2	P52657	109 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	SSRP1	Q08945	709 aa	Known RBP	4.85	□□□□□ -1.63
CD46-215	ENST00000488596	SURF1	Q15526	300 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	PRSS53	Q2L4Q9	553 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	E4F1	Q66K89	784 aa	Predicted RBP	4.85	□□□□□ -1.63
CD46-215	ENST00000488596	ZNF585A	Q6P3V2	769 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	CRIP3	Q6Q6R5	217 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	JAZF1	Q86VZ6	243 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	ST13P5	Q8NFI4	369 aa	Predicted RBP	4.85	□□□□□ -1.63
CD46-215	ENST00000488596	DNER	Q8NFT8	737 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	IGDCC4	Q8TDY8	1250 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	ZCCHC14	Q8WYQ9	949 aa	Known RBP	4.85	□□□□□ -1.63
CD46-215	ENST00000488596	TOE1	Q96GM8	510 aa	Known RBP	4.85	□□□□□ -1.63
CD46-215	ENST00000488596	KLC2	Q9H0B6	622 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	TMEM168	Q9H0V1	697 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	L2HGDH	Q9H9P8	463 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	DTL	Q9NZJ0	730 aa		4.85	□□□□□ -1.63
CD46-215	ENST00000488596	MRPL42	Q9Y6G3	142 aa	Known RBP	4.85	□□□□□ -1.63
CD46-215	ENST00000488596		A0A1W2PQU0	124 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	TLDC2	A0PJX2	215 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	HGS	O14964	777 aa	Predicted RBP	4.84	□□□□□ -1.63
CD46-215	ENST00000488596	TADA3	O75528	432 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	SNRPB2	P08579	225 aa	Known RBP	4.84	□□□□□ -1.63
CD46-215	ENST00000488596	FAM153B	P0C7A2	387 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	NAT2	P11245	290 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	ACVRL1	P37023	503 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	PPP2CB	P62714	309 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	PPP2CA	P67775	309 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	DENND5A	Q6IQ26	1287 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	PKN3	Q6P5Z2	889 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	TEPP	Q6URK8	271 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	PLEKHH3	Q7Z736	793 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	ZFPM1	Q8IX07	1006 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	KISS1R	Q969F8	398 aa	Predicted RBP	4.84	□□□□□ -1.63
CD46-215	ENST00000488596	RNPC3	Q96LT9	517 aa	Known RBP	4.84	□□□□□ -1.63
CD46-215	ENST00000488596	WWC2-AS2	Q96NR7	200 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	MRI	Q9BWK5	157 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	SPATA9	Q9BWV2	254 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	CROT	Q9UKG9	612 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	COA3	Q9Y2R0	106 aa	Predicted RBP	4.84	□□□□□ -1.63
CD46-215	ENST00000488596	PCDHA2	Q9Y5H9	948 aa		4.84	□□□□□ -1.63
CD46-215	ENST00000488596	MEFV	O15553	781 aa	Predicted RBP	4.83	□□□□□ -1.64
CD46-215	ENST00000488596	MYO1B	O43795	1136 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	B4GALT4	O60513	344 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	SCG5	P05408	212 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	GRIA2	P42262	883 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	STEAP3	Q658P3	488 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	ZNF227	Q86WZ6	799 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	CIR1	Q86X95	450 aa	Predicted RBP	4.83	□□□□□ -1.64
CD46-215	ENST00000488596	PALM2	Q8IXS6	379 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	KBTBD2	Q8IY47	623 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	SH3TC2	Q8TF17	1288 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	CLIC6	Q96NY7	704 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	ZNF747	Q9BV97	191 aa		4.83	□□□□□ -1.64
CD46-215	ENST00000488596	RBPJL	Q9UBG7	517 aa		4.83	□□□□□ -1.64

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