RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 MTMR1Q13613 665 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 KIAA0753Q2KHM9 967 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 LRIT3Q3SXY7 679 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 METTL7BQ6UX53 244 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 NLRX1Q86UT6 975 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 NECAB1Q8N987 351 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 CRYGNQ8WXF5 182 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 SCLYQ96I15 445 aa15.91■□□□□ 0.14
SYNE1-226ENST00000488376 EDIL3O43854 480 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 PFKFB2O60825 505 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 PPFIA4O75335 1185 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 ARHGAP4P98171 946 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 AKAP17AQ02040 695 aaKnown RBP15.9■□□□□ 0.14
SYNE1-226ENST00000488376 SSRP1Q08945 709 aaKnown RBP15.9■□□□□ 0.14
SYNE1-226ENST00000488376 AP3B2Q13367 1082 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 NEDD9Q14511 834 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 DHX38Q92620 1227 aaKnown RBP15.9■□□□□ 0.14
SYNE1-226ENST00000488376 WNT8BQ93098 351 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.9■□□□□ 0.14
SYNE1-226ENST00000488376 MXRA8Q9BRK3 442 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 SEZ6LQ9BYH1 1024 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 KCNH7Q9NS40 1196 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 GJB4Q9NTQ9 266 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 DOCK5Q9H7D0 1870 aa15.9■□□□□ 0.14
SYNE1-226ENST00000488376 FAM86B1E9PN63 330 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 NOP56O00567 594 aaKnown RBP15.89■□□□□ 0.13
SYNE1-226ENST00000488376 CPLX1O14810 134 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 FOSP01100 380 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-226ENST00000488376 FAM86B2P0C5J1 330 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 NEK4P51957 841 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 ST3GAL1Q11201 340 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 ITGB3BPQ13352 177 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-226ENST00000488376 NPY5RQ15761 445 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 PTGISQ16647 500 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 ME3Q16798 604 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 UTP14CQ5TAP6 766 aaKnown RBP15.89■□□□□ 0.13
SYNE1-226ENST00000488376 SESTD1Q86VW0 696 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 REXO1Q8N1G1 1221 aaKnown RBP15.89■□□□□ 0.13
SYNE1-226ENST00000488376 KIF2CQ99661 725 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 SENP7Q9BQF6 1050 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 SLKQ9H2G2 1235 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-226ENST00000488376 EHMT1Q9H9B1 1298 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 C6orf50Q9HD87 102 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 GTF2IRD1Q9UHL9 959 aa15.89■□□□□ 0.13
SYNE1-226ENST00000488376 IGLV3-22A0A075B6J6 115 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 GSTTP1A0A1W2PQM5 241 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 SUPT20HL2P0C7V6 817 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 PTPN11Q06124 597 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-226ENST00000488376 CEP55Q53EZ4 464 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 TMEM240Q5SV17 173 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 FAM109BQ6ICB4 259 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-226ENST00000488376 TRIM22Q8IYM9 498 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 TMEM199Q8N511 208 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 C7orf31Q8N865 590 aa15.88■□□□□ 0.13
SYNE1-226ENST00000488376 H3BRB1 525 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 MEIS1O00470 390 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 DEXIO95424 95 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 TCF7P36402 384 aaPredicted RBP15.87■□□□□ 0.13
SYNE1-226ENST00000488376 PPIGQ13427 754 aaKnown RBP eCLIP15.87■□□□□ 0.13
SYNE1-226ENST00000488376 ZNF365Q70YC5 407 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 Q7L0L9 218 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 CCDC12Q8WUD4 166 aaPredicted RBP15.87■□□□□ 0.13
SYNE1-226ENST00000488376 RNPC3Q96LT9 517 aaKnown RBP15.87■□□□□ 0.13
SYNE1-226ENST00000488376 KATNAL1Q9BW62 490 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 GLT8D2Q9H1C3 349 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 TUT1Q9H6E5 874 aaKnown RBP15.87■□□□□ 0.13
SYNE1-226ENST00000488376 AGO4Q9HCK5 861 aaKnown RBP15.87■□□□□ 0.13
SYNE1-226ENST00000488376 KCNJ14Q9UNX9 436 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 MYH7BA7E2Y1 1941 aa15.87■□□□□ 0.13
SYNE1-226ENST00000488376 LAMA2P24043 3122 aaKnown RBP15.86■□□□□ 0.13
SYNE1-226ENST00000488376 SMIM10L2AP0DMW4 78 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 SMIM10L2BP0DMW5 78 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 NLRP5P59047 1200 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 TEX2Q8IWB9 1127 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 CCDC148Q8NFR7 591 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 CDHR1Q96JP9 859 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 PCYT2Q99447 389 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 RNPEPQ9H4A4 650 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 IL23AQ9NPF7 189 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 SH3GLB2Q9NR46 395 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 CXXC1Q9P0U4 656 aaPredicted RBP15.86■□□□□ 0.13
SYNE1-226ENST00000488376 NOD1Q9Y239 953 aa15.86■□□□□ 0.13
SYNE1-226ENST00000488376 M0R2N6 131 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 DDX39AO00148 427 aaKnown RBP15.85■□□□□ 0.13
SYNE1-226ENST00000488376 CCNE2O96020 404 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 CYP3A4P08684 503 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 FDPSP14324 419 aaKnown RBP15.85■□□□□ 0.13
SYNE1-226ENST00000488376 GNA11P29992 359 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 HOXC8P31273 242 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 ZNF76P36508 570 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 GPNMBQ14956 572 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 ANKRD1Q15327 319 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 TRIM71Q2Q1W2 868 aaKnown RBP15.85■□□□□ 0.13
SYNE1-226ENST00000488376 DEFB128Q7Z7B8 93 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 PLA2G4DQ86XP0 818 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 GIMAP8Q8ND71 665 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-226ENST00000488376 GTF3C6Q969F1 213 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 LENG9Q96B70 501 aa15.85■□□□□ 0.13
SYNE1-226ENST00000488376 JPH1Q9HDC5 661 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-226ENST00000488376 SETD4Q9NVD3 440 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms