RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 A0A1W2PQY0 241 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 CCNT1O60563 726 aaKnown RBP12.54□□□□□ -0.4
UBE4B-210ENST00000488228 ASGR1P07306 291 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 MYL3P08590 195 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 TGFB3P10600 412 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 COL6A1P12109 1028 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 ATP2B1P20020 1258 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 SYT1P21579 422 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 CPT1AP50416 773 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 USP11P51784 963 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 ACLYP53396 1101 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 NKX3-2P78367 333 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 NEDD9Q14511 834 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 NBR1Q14596 966 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 KCNA10Q16322 511 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 HSDL1Q3SXM5 330 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 METTL7BQ6UX53 244 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 CXCL17Q6UXB2 119 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 FERMT3Q86UX7 667 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 POTEDQ86YR6 584 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 EMID1Q96A84 441 aaPredicted RBP12.54□□□□□ -0.4
UBE4B-210ENST00000488228 MBOAT7Q96N66 472 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 C11orf49Q9H6J7 331 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 MLXIPQ9HAP2 919 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 PHF24Q9UPV7 400 aa12.54□□□□□ -0.4
UBE4B-210ENST00000488228 LTBP2Q14767 1821 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 CYP3A7-CYP3A51PA0A087WV96 503 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 A6NJR5 290 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 IPO5O00410 1097 aaKnown RBP12.53□□□□□ -0.4
UBE4B-210ENST00000488228 MSH4O15457 936 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 PDCP20941 246 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 CYP3A7P24462 503 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 U2AF2P26368 475 aaKnown RBP eCLIP12.53□□□□□ -0.4
UBE4B-210ENST00000488228 LAMC2Q13753 1193 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 MOXD1Q6UVY6 613 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 NECAB2Q7Z6G3 386 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 TRIM50Q86XT4 487 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 PPTC7Q8NI37 304 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 PPP1R13LQ8WUF5 828 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 SENP7Q9BQF6 1050 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 SDF4Q9BRK5 362 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 ZNF577Q9BSK1 485 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 JPH1Q9HDC5 661 aaPredicted RBP12.53□□□□□ -0.4
UBE4B-210ENST00000488228 NFASCO94856 1347 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 TANC1Q9C0D5 1861 aa12.53□□□□□ -0.4
UBE4B-210ENST00000488228 MOXD2PA6NHM9 499 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 NOP56O00567 594 aaKnown RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 CCNE2O96020 404 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 GCFC2P16383 781 aaKnown RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 ATN1P54259 1190 aaPredicted RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 PSMC6P62333 389 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 PURAQ00577 322 aaKnown RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 BECN1Q14457 450 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 Q4G0T1 1027 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 TTC38Q5R3I4 469 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 PCSK9Q8NBP7 692 aaKnown RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 ETNPPLQ8TBG4 499 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 SLC5A5Q92911 643 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 GPR20Q99678 358 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 TSEN34Q9BSV6 310 aaKnown RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 SENP6Q9GZR1 1112 aaPredicted RBP12.52□□□□□ -0.41
UBE4B-210ENST00000488228 SLC9A2Q9UBY0 812 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 MTMR6Q9Y217 621 aa12.52□□□□□ -0.41
UBE4B-210ENST00000488228 MAFGO15525 162 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 DHX15O43143 795 aaKnown RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 CHMP2AO43633 222 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 STX6O43752 255 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 ZEB2O60315 1214 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 NEMFO60524 1076 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 LGALS2P05162 132 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 HOXD8P13378 290 aaPredicted RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 MCM7P33993 719 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 TOB1P50616 345 aaPredicted RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 CHMP4BP1P59074 171 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 BRDTQ58F21 947 aaPredicted RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 LRCH2Q5VUJ6 765 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 FOXD4L5Q5VV16 416 aaPredicted RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 PPP4R3AQ6IN85 833 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 GIMAP8Q8ND71 665 aaPredicted RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 FOXD4L4Q8WXT5 416 aaPredicted RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 NAP1L4Q99733 375 aaKnown RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 KCNMB3Q9NPA1 279 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 STARD7Q9NQZ5 370 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 POLR3EQ9NVU0 708 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 NOL7Q9UMY1 257 aaKnown RBP12.51□□□□□ -0.41
UBE4B-210ENST00000488228 ELP1O95163 1332 aa12.51□□□□□ -0.41
UBE4B-210ENST00000488228 TCHHQ07283 1943 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 GAS7O60861 476 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 CAPN2P17655 700 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 TCF7P36402 384 aaPredicted RBP12.5□□□□□ -0.41
UBE4B-210ENST00000488228 ACTR2P61160 394 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 RESTQ13127 1097 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 PKP1Q13835 747 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 ZNF174Q15697 407 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 DGKDQ16760 1214 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 LRRC26Q2I0M4 334 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 UTP14CQ5TAP6 766 aaKnown RBP12.5□□□□□ -0.41
UBE4B-210ENST00000488228 KAT2BQ92831 832 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 GLT1D1Q96MS3 346 aa12.5□□□□□ -0.41
UBE4B-210ENST00000488228 MTG1Q9BT17 334 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms