RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, human

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM39A-208	ENST00000486159		E7EWF7	191 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	IFIT3	O14879	490 aa	Known RBP	10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	NBN	O60934	754 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	SUPT20HL2	P0C7V6	817 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	RPS6KB1	P23443	525 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PSEN2	P49810	448 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	AK2	P54819	239 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	DEFB103A	P81534	67 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TFF2	Q03403	129 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	GRM4	Q14833	912 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	CCDC178	Q5BJE1	867 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TRAF7	Q6Q0C0	670 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	FCHSD1	Q86WN1	690 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MCF2L2	Q86YR7	1114 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	NECAB3	Q96P71	396 aa	Predicted RBP	10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	NEK1	Q96PY6	1258 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PDCD2L	Q9BRP1	358 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	AMN	Q9BXJ7	453 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	SEZ6L	Q9BYH1	1024 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PNMA2	Q9UL42	364 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PCDHA11	Q9Y5I1	949 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PCDHA1	Q9Y5I3	950 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MRVI1	Q9Y6F6	885 aa		10.81	□□□□□ -0.68
TMEM39A-208	ENST00000486159	ZBTB5	O15062	677 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	KPNA6	O60684	536 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	EIF3J	O75822	258 aa	Known RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TAP1	Q03518	808 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TROAP	Q12815	778 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MBTPS1	Q14703	1052 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MFSD10	Q14728	455 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PGM5	Q15124	567 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TRIM71	Q2Q1W2	868 aa	Known RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	HSDL1	Q3SXM5	330 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	BRDT	Q58F21	947 aa	Predicted RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	RAB11FIP4	Q86YS3	637 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	CMTR1	Q8N1G2	835 aa	Known RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	FBXL16	Q8N461	479 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	RETREG2	Q8NC44	543 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	IGDCC4	Q8TDY8	1250 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TNPO1	Q92973	898 aa	Known RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	IWS1	Q96ST2	819 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MPHOSPH6	Q99547	160 aa	Known RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MTIF3	Q9H2K0	278 aa	Known RBP	10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	RIOX1	Q9H6W3	641 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	CNNM2	Q9H8M5	875 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	RTEL1	Q9NZ71	1219 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	GTF2IRD1	Q9UHL9	959 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	NOD1	Q9Y239	953 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	XIRP2	A4UGR9	3374 aa		10.8	□□□□□ -0.68
TMEM39A-208	ENST00000486159	HAS3	O00219	553 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	GGPS1	O95749	300 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	CKB	P12277	381 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MRPS9	P82933	396 aa	Known RBP	10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	GHRHR	Q02643	423 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	PTPN11	Q06124	597 aa	Predicted RBP	10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	SEMA3F	Q13275	785 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	DGKD	Q16760	1214 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	KIAA0753	Q2KHM9	967 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	ADCK5	Q3MIX3	580 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TMEM67	Q5HYA8	995 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TJAP1	Q5JTD0	557 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	ZNF618	Q5T7W0	954 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MYSM1	Q5VVJ2	828 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	VSIG10L	Q86VR7	867 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	HERC6	Q8IVU3	1022 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	DHX37	Q8IY37	1157 aa	Known RBP	10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	TRPC6	Q9Y210	931 aa		10.79	□□□□□ -0.68
TMEM39A-208	ENST00000486159	hCG_1642624	A0A1W2PR95	340 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159		B4DLN1	442 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	RXRA	P19793	462 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	UBA1	P22314	1058 aa	Known RBP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	KCNQ1	P51787	676 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MRPL12	P52815	198 aa	Known RBP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	WDR5	P61964	334 aa	Known RBP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	BFSP2	Q13515	415 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	LAMC2	Q13753	1193 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	WTAP	Q15007	396 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	CELF3	Q5SZQ8	465 aa	Known RBP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	FAM117B	Q6P1L5	589 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	LRRC8D	Q7L1W4	858 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	DHX32	Q7L7V1	743 aa	Known RBP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	SESTD1	Q86VW0	696 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MB21D2	Q8IYB1	491 aa	Predicted RBP	10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	ARNTL2	Q8WYA1	636 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	SPATA33	Q96N06	139 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	ASB2	Q96Q27	587 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	C16orf70	Q9BSU1	422 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	LRRC2	Q9BYS8	371 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MTCH2	Q9Y6C9	303 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	STK24	Q9Y6E0	443 aa		10.78	□□□□□ -0.68
TMEM39A-208	ENST00000486159	MUC3A	Q02505	3323 aa		10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	LPXN	O60711	386 aa		10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	PLEKHA8P1	O95397	391 aa		10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	BRD1	O95696	1058 aa		10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	F2	P00734	622 aa		10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	PFKM	P08237	780 aa		10.77	□□□□□ -0.69
TMEM39A-208	ENST00000486159	POLR2M	P0CAP2	368 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms