RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ADD1P35611 737 aaKnown RBP19.01■□□□□ 0.63
TRIM54-203ENST00000485306 GDF6Q6KF10 455 aaPredicted RBP19.01■□□□□ 0.63
TRIM54-203ENST00000485306 TEX2Q8IWB9 1127 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 CAGE1Q8TC20 777 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 CDHR1Q96JP9 859 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 SENP7Q9BQF6 1050 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 HDAC6Q9UBN7 1215 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 GTF2IRD1Q9UHL9 959 aa19.01■□□□□ 0.63
TRIM54-203ENST00000485306 V9GY48 417 aaPredicted RBP19.01■□□□□ 0.63
TRIM54-203ENST00000485306 hCG_1984214I3L0E3 225 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 HAS3O00219 553 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 IQCF3P0C7M6 154 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 ACTN1P12814 892 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 DNAJB2P25686 324 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 NAPAP54920 295 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 WWC2Q6AWC2 1192 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 METTL7BQ6UX53 244 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 CYFIP1Q7L576 1253 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 DEFB128Q7Z7B8 93 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 ZNF713Q8N859 430 aaPredicted RBP19■□□□□ 0.63
TRIM54-203ENST00000485306 GUCD1Q96NT3 240 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 MSRAQ9UJ68 235 aa19■□□□□ 0.63
TRIM54-203ENST00000485306 ZBBXA8MT70 800 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 UBE2SQ16763 222 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 PPP1R18Q6NYC8 613 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 AFAP1L1Q8TED9 768 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 TIFAQ96CG3 184 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 GPRASP2Q96D09 838 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 CDX2Q99626 313 aaPredicted RBP18.99■□□□□ 0.63
TRIM54-203ENST00000485306 FTOQ9C0B1 505 aaKnown RBP eCLIP18.99■□□□□ 0.63
TRIM54-203ENST00000485306 GLT8D2Q9H1C3 349 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 TTYH1Q9H313 450 aaPredicted RBP18.99■□□□□ 0.63
TRIM54-203ENST00000485306 TSHZ2Q9NRE2 1034 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 SH2B1Q9NRF2 756 aaPredicted RBP18.99■□□□□ 0.63
TRIM54-203ENST00000485306 PCDHA6Q9UN73 950 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 PCDHA8Q9Y5H6 950 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 SLC4A7Q9Y6M7 1214 aa18.99■□□□□ 0.63
TRIM54-203ENST00000485306 TRIP12Q14669 1992 aaPredicted RBP18.99■□□□□ 0.63
TRIM54-203ENST00000485306 LAMA2P24043 3122 aaKnown RBP18.98■□□□□ 0.63
TRIM54-203ENST00000485306 H3BRB1 525 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 MAFGO15525 162 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 PARNO95453 639 aaKnown RBP18.98■□□□□ 0.63
TRIM54-203ENST00000485306 FOSP01100 380 aaPredicted RBP18.98■□□□□ 0.63
TRIM54-203ENST00000485306 PDIA3P30101 505 aaKnown RBP18.98■□□□□ 0.63
TRIM54-203ENST00000485306 RAB30Q15771 203 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 SLC17A8Q8NDX2 589 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 C16orf70Q9BSU1 422 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 TUT1Q9H6E5 874 aaKnown RBP18.98■□□□□ 0.63
TRIM54-203ENST00000485306 RIC8AQ9NPQ8 531 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 CXXC1Q9P0U4 656 aaPredicted RBP18.98■□□□□ 0.63
TRIM54-203ENST00000485306 TPCN1Q9ULQ1 816 aa18.98■□□□□ 0.63
TRIM54-203ENST00000485306 SELPP16109 830 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 ADCY7P51828 1080 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 SEMA3FQ13275 785 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 PTK7Q13308 1070 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 TYW1BQ6NUM6 668 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 HSCBQ8IWL3 235 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 PBX4Q9BYU1 374 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 ZNF576Q9H609 170 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 BCAS3Q9H6U6 928 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 BARHL2Q9NY43 387 aa18.97■□□□□ 0.63
TRIM54-203ENST00000485306 SMCO2A6NFE2 343 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 GRXCR1A8MXD5 290 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 STXBP3O00186 592 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 PFKFB2O60825 505 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 LGALS2P05162 132 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 CCT2P78371 535 aaKnown RBP18.96■□□□□ 0.63
TRIM54-203ENST00000485306 CTAGE1Q96RT6 745 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 GPR20Q99678 358 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 SLKQ9H2G2 1235 aaPredicted RBP18.96■□□□□ 0.63
TRIM54-203ENST00000485306 ZNF215Q9UL58 517 aaPredicted RBP18.96■□□□□ 0.63
TRIM54-203ENST00000485306 SCN5AQ14524 2016 aa18.96■□□□□ 0.63
TRIM54-203ENST00000485306 C17orf102A2RUQ5 167 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 PRPF3O43395 683 aaKnown RBP18.95■□□□□ 0.62
TRIM54-203ENST00000485306 GNAT1P11488 350 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 ANP32AP39687 249 aaKnown RBP18.95■□□□□ 0.62
TRIM54-203ENST00000485306 AKAP17AQ02040 695 aaKnown RBP18.95■□□□□ 0.62
TRIM54-203ENST00000485306 RBL2Q08999 1139 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 MTMR1Q13613 665 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 BECN1Q14457 450 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 NTRK3Q16288 839 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 PFKFB3Q16875 520 aaPredicted RBP18.95■□□□□ 0.62
TRIM54-203ENST00000485306 LRRC8DQ7L1W4 858 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 UBIAD1Q9Y5Z9 338 aa18.95■□□□□ 0.62
TRIM54-203ENST00000485306 DOCK5Q9H7D0 1870 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 K7ELQ4 463 aaPredicted RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 CD2BP2O95400 341 aaKnown RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 CKBP12277 381 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 SCG2P13521 617 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 ATP2A2P16615 1042 aaKnown RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 ITGB5P18084 799 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 PBX2P40425 430 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 SP4Q02446 784 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 ME3Q16798 604 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 UTP14CQ5TAP6 766 aaKnown RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 CPLX2Q6PUV4 134 aaKnown RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 CCDC12Q8WUD4 166 aaPredicted RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 PHKBQ93100 1093 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 VWCEQ96DN2 955 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 TMX3Q96JJ7 454 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms