RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 SMARCA1P28370 1054 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 ICAM3P32942 547 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 THPOP40225 353 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 NEDD9Q14511 834 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 TRIM71Q2Q1W2 868 aaKnown RBP17.56■□□□□ 0.4
LIMS3-203ENST00000480744 CCDC82Q8N4S0 544 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 TUT1Q9H6E5 874 aaKnown RBP17.56■□□□□ 0.4
LIMS3-203ENST00000480744 SLC12A7Q9Y666 1083 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 VCANP13611 3396 aa17.56■□□□□ 0.4
LIMS3-203ENST00000480744 MEIS2O14770 477 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 ARHGEF15O94989 841 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 CXCL10P02778 98 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 SMIM10L2AP0DMW4 78 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 SMIM10L2BP0DMW5 78 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 LIFRP42702 1097 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 DEFB103AP81534 67 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 TAP1Q03518 808 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 SEMA3FQ13275 785 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 TCTN1Q2MV58 587 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 UTP14CQ5TAP6 766 aaKnown RBP17.55■□□□□ 0.4
LIMS3-203ENST00000480744 PCNX4Q63HM2 1172 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 METTL7BQ6UX53 244 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 ATP6V0A1Q93050 837 aa17.55■□□□□ 0.4
LIMS3-203ENST00000480744 TCF20Q9UGU0 1960 aaKnown RBP17.55■□□□□ 0.4
LIMS3-203ENST00000480744 ABHD14A-ACY1A0A1B0GW23 586 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 EPOPA6NHQ4 379 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 PIK3CDO00329 1044 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 GTPBP6O43824 516 aaPredicted RBP17.54■□□□□ 0.4
LIMS3-203ENST00000480744 IKBKEQ14164 716 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 NECTIN1Q15223 517 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 SKIV2LQ15477 1246 aaKnown RBP17.54■□□□□ 0.4
LIMS3-203ENST00000480744 FAM117BQ6P1L5 589 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 TRAF7Q6Q0C0 670 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 NLRX1Q86UT6 975 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 SERINC5Q86VE9 423 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 MICU3Q86XE3 530 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 TRIM50Q86XT4 487 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 ATXN2LQ8WWM7 1075 aaKnown RBP17.54■□□□□ 0.4
LIMS3-203ENST00000480744 GPR20Q99678 358 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 USP26Q9BXU7 913 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 TSPYL2Q9H2G4 693 aaPredicted RBP17.54■□□□□ 0.4
LIMS3-203ENST00000480744 PSTPIP2Q9H939 334 aa17.54■□□□□ 0.4
LIMS3-203ENST00000480744 TRANK1O15050 2925 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 LCHNA4D1U4 455 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 RSPH10B2B2RC85 870 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 LGR5O75473 907 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 RSPH10BP0C881 870 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 MBTPS1Q14703 1052 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 UBE2SQ16763 222 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 RNF20Q5VTR2 975 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 XRRA1Q6P2D8 792 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 SYNE3Q6ZMZ3 975 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 FANCBQ8NB91 859 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 IL27Q8NEV9 243 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 ZNF215Q9UL58 517 aaPredicted RBP17.53■□□□□ 0.4
LIMS3-203ENST00000480744 TELO2Q9Y4R8 837 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 TTC28Q96AY4 2481 aa17.53■□□□□ 0.4
LIMS3-203ENST00000480744 EMSYQ7Z589 1322 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 SIP14410 1827 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 TREHO43280 583 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 EFCAB14O75071 495 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 CTSHP09668 335 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 MRPS5P82675 430 aaKnown RBP17.52■□□□□ 0.4
LIMS3-203ENST00000480744 BMP2KLQ5H9B9 411 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 KRT40Q6A162 431 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 TMTC3Q6ZXV5 915 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 CENPQQ7L2Z9 268 aaPredicted RBP17.52■□□□□ 0.4
LIMS3-203ENST00000480744 HEATR3Q7Z4Q2 680 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 SPRED2Q7Z698 418 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 ASB2Q96Q27 587 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 RNPEPQ9H4A4 650 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 SETD4Q9NVD3 440 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 PKD2L1Q9P0L9 805 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 MTCH2Q9Y6C9 303 aa17.52■□□□□ 0.4
LIMS3-203ENST00000480744 SPDYE3A6NKU9 549 aa17.51■□□□□ 0.39
LIMS3-203ENST00000480744 DBF4BQ8NFT6 615 aa17.51■□□□□ 0.39
LIMS3-203ENST00000480744 TCEANC2Q96MN5 208 aa17.51■□□□□ 0.39
LIMS3-203ENST00000480744 NEK1Q96PY6 1258 aa17.51■□□□□ 0.39
LIMS3-203ENST00000480744 SENP7Q9BQF6 1050 aa17.51■□□□□ 0.39
LIMS3-203ENST00000480744 MTUS1Q9ULD2 1270 aa17.51■□□□□ 0.39
LIMS3-203ENST00000480744 REV3LO60673 3130 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 SPTBN5Q9NRC6 3674 aaKnown RBP17.5■□□□□ 0.39
LIMS3-203ENST00000480744 GJB5O95377 273 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 GNAT1P11488 350 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 HOXC8P31273 242 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 ARHGAP4P98171 946 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 GRB10Q13322 594 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.5■□□□□ 0.39
LIMS3-203ENST00000480744 SGMS1Q86VZ5 419 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 GIMAP8Q8ND71 665 aaPredicted RBP17.5■□□□□ 0.39
LIMS3-203ENST00000480744 GPRASP2Q96D09 838 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 CDHR1Q96JP9 859 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 RAD9AQ99638 391 aa17.5■□□□□ 0.39
LIMS3-203ENST00000480744 ATP9AO75110 1047 aa17.49■□□□□ 0.39
LIMS3-203ENST00000480744 AMHP03971 560 aa17.49■□□□□ 0.39
LIMS3-203ENST00000480744 ITGB5P18084 799 aa17.49■□□□□ 0.39
LIMS3-203ENST00000480744 TCF7P36402 384 aaPredicted RBP17.49■□□□□ 0.39
LIMS3-203ENST00000480744 APOA5Q6Q788 366 aa17.49■□□□□ 0.39
LIMS3-203ENST00000480744 MYOCDQ8IZQ8 938 aa17.49■□□□□ 0.39
LIMS3-203ENST00000480744 ADAMTS19Q8TE59 1207 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms