RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 SLC43A3Q8NBI5 491 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 TBCKQ8TEA7 893 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 WASF1Q92558 559 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 TRIM43Q96BQ3 446 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-208ENST00000476739 TMX3Q96JJ7 454 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 GPR20Q99678 358 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 SENP7Q9BQF6 1050 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 LLPHQ9BRT6 129 aaKnown RBP11.05□□□□□ -0.64
HDAC3-208ENST00000476739 MTG1Q9BT17 334 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-208ENST00000476739 AGO4Q9HCK5 861 aaKnown RBP11.05□□□□□ -0.64
HDAC3-208ENST00000476739 NR2E3Q9Y5X4 410 aa11.05□□□□□ -0.64
HDAC3-208ENST00000476739 RBAK-RBAKDNI3L0D1 243 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 HOXD8P13378 290 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-208ENST00000476739 CIITAP33076 1130 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 GUCY1B3Q02153 619 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 DGKDQ16760 1214 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 INF2Q27J81 1249 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 NBPF20Q3BBV1 942 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 PRR16Q569H4 304 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 BRDTQ58F21 947 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-208ENST00000476739 PRPF38BQ5VTL8 546 aaKnown RBP11.04□□□□□ -0.64
HDAC3-208ENST00000476739 GALNT17Q6IS24 598 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 PLA2G4DQ86XP0 818 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 TNFRSF25Q93038 417 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 GJA10Q969M2 543 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 LENG9Q96B70 501 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 C16orf70Q9BSU1 422 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 PRDM5Q9NQX1 630 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-208ENST00000476739 PDLIM7Q9NR12 457 aa11.04□□□□□ -0.64
HDAC3-208ENST00000476739 DNAH12Q6ZR08 3092 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 GSTTP1A0A1W2PQM5 241 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 BTBD18B2RXH4 712 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 DDX39AO00148 427 aaKnown RBP11.03□□□□□ -0.64
HDAC3-208ENST00000476739 HAS3O00219 553 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 MAFGO15525 162 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 DHX15O43143 795 aaKnown RBP11.03□□□□□ -0.64
HDAC3-208ENST00000476739 B4GALT4O60513 344 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 KPNA6O60684 536 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 PPFIA4O75335 1185 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 TDP2O95551 362 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 CD4P01730 458 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 MMP1P03956 469 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 LGALS2P05162 132 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 CLTBP09497 229 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 XBP1P17861 261 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 HIC1Q14526 733 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 MCTP2Q6DN12 878 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 PIK3AP1Q6ZUJ8 805 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 NIPA1Q7RTP0 329 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 TRIM50Q86XT4 487 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 FAM177A1Q8N128 213 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-208ENST00000476739 CDHR1Q96JP9 859 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 TOX2Q96NM4 488 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 TRPV6Q9H1D0 765 aa11.03□□□□□ -0.64
HDAC3-208ENST00000476739 TRMT13Q9NUP7 481 aaKnown RBP11.03□□□□□ -0.64
HDAC3-208ENST00000476739 LTBP2Q14767 1821 aa11.02□□□□□ -0.64
HDAC3-208ENST00000476739 DCDC2CA8MYV0 355 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 NOP56O00567 594 aaKnown RBP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 WNT7AO00755 349 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 CCNE2O96020 404 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 F2P00734 622 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 KRT2P35908 639 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 TCF7P36402 384 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 PSEN2P49810 448 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 USP11P51784 963 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 MDM2Q00987 491 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 MFSD10Q14728 455 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 NONOQ15233 471 aaKnown RBP eCLIP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 KIAA0753Q2KHM9 967 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 FAM47CQ5HY64 1035 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 UTP14CQ5TAP6 766 aaKnown RBP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 KRT25Q7Z3Z0 450 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 GIMAP8Q8ND71 665 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 CTAGE1Q96RT6 745 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 PCYT2Q99447 389 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 JPH1Q9HDC5 661 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-208ENST00000476739 TMEM39AQ9NV64 488 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 SLC9A2Q9UBY0 812 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 TBX21Q9UL17 535 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 NFASCO94856 1347 aa11.02□□□□□ -0.65
HDAC3-208ENST00000476739 CYP3A7-CYP3A51PA0A087WV96 503 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 CCDC194A0A1B0GVG4 234 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 IPO5O00410 1097 aaKnown RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 KIAA0355O15063 1070 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 MSH4O15457 936 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 SLC37A4O43826 429 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 CYP2C9P11712 490 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 CYP3A7P24462 503 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 MAGEA10P43363 369 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 MCM2P49736 904 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 HMGN5P82970 282 aaKnown RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 ZNF200P98182 395 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 GDF6Q6KF10 455 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 NFRKBQ6P4R8 1299 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 CHRDL2Q6WN34 429 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 DIS3L2Q8IYB7 885 aaKnown RBP11.01□□□□□ -0.65
HDAC3-208ENST00000476739 IL27Q8NEV9 243 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 SEPT1Q8WYJ6 367 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 C8orf76Q96K31 380 aa11.01□□□□□ -0.65
HDAC3-208ENST00000476739 MBOAT7Q96N66 472 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms