RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ZBTB43O43298 467 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 NBNO60934 754 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 CXCL10P02778 98 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 ATP2A2P16615 1042 aaKnown RBP21.35■■□□□ 1.01
COL7A1-209ENST00000474432 HSPA4P34932 840 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 NEDD9Q14511 834 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 KRT32Q14532 448 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 MBTPS1Q14703 1052 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 HEATR3Q7Z4Q2 680 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 SENP7Q9BQF6 1050 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 PRDM12Q9H4Q4 367 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 TUT1Q9H6E5 874 aaKnown RBP21.35■■□□□ 1.01
COL7A1-209ENST00000474432 RBM28Q9NW13 759 aaKnown RBP21.35■■□□□ 1.01
COL7A1-209ENST00000474432 MSRAQ9UJ68 235 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 SNX14Q9Y5W7 946 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 UBIAD1Q9Y5Z9 338 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 KCNA2P16389 499 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 ADGRE1Q14246 886 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 RTN1Q16799 776 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 SYNE3Q6ZMZ3 975 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 SERINC5Q86VE9 423 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.34■■□□□ 1.01
COL7A1-209ENST00000474432 CCDC155Q8N6L0 562 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 PCDHA6Q9UN73 950 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 PCDHA8Q9Y5H6 950 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 PCDHA11Q9Y5I1 949 aa21.34■■□□□ 1.01
COL7A1-209ENST00000474432 KLF18A0A0U1RQI7 1052 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 ZNF618Q5T7W0 954 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 TRIM50Q86XT4 487 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 USP38Q8NB14 1042 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 GPRASP2Q96D09 838 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 USP26Q9BXU7 913 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 FTOQ9C0B1 505 aaKnown RBP eCLIP21.33■■□□□ 1.01
COL7A1-209ENST00000474432 RNPEPQ9H4A4 650 aa21.33■■□□□ 1.01
COL7A1-209ENST00000474432 V9GY48 417 aaPredicted RBP21.33■■□□□ 1.01
COL7A1-209ENST00000474432 DLL1O00548 723 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 HMGB1P09429 215 aaKnown RBP21.32■■□□□ 1
COL7A1-209ENST00000474432 SMIM10L2AP0DMW4 78 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 SMIM10L2BP0DMW5 78 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 ACTN1P12814 892 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 RCAN1P53805 252 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 NLRX1Q86UT6 975 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 SLC28A3Q9HAS3 691 aa21.32■■□□□ 1
COL7A1-209ENST00000474432 GOLGA8AA7E2F4 631 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 GOLGA8BA8MQT2 603 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 STXBP3O00186 592 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 NOP56O00567 594 aaKnown RBP21.31■■□□□ 1
COL7A1-209ENST00000474432 ARHGEF15O94989 841 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 ADD1P35611 737 aaKnown RBP21.31■■□□□ 1
COL7A1-209ENST00000474432 ADAM17P78536 824 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 PHOSPHO2Q8TCD6 241 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 SLC9A7Q96T83 725 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 RIC8AQ9NPQ8 531 aa21.31■■□□□ 1
COL7A1-209ENST00000474432 GSTTP1A0A1W2PQM5 241 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 C17orf102A2RUQ5 167 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 ADAMTS3O15072 1205 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 TREHO43280 583 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 BAIAP3O94812 1187 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 APOBRQ0VD83 1088 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 PPP1R18Q6NYC8 613 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 Q6ZUG5 572 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 HERC6Q8IVU3 1022 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 FBXL16Q8N461 479 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 JAKMIP1Q96N16 626 aaKnown RBP21.3■■□□□ 1
COL7A1-209ENST00000474432 AGXT2Q9BYV1 514 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 OSBPL7Q9BZF2 842 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 JADE2Q9NQC1 790 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 NID2Q14112 1375 aa21.3■■□□□ 1
COL7A1-209ENST00000474432 SPDYE3A6NKU9 549 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 PARNO95453 639 aaKnown RBP21.29■■□□□ 1
COL7A1-209ENST00000474432 CLK2P49760 499 aaKnown RBP21.29■■□□□ 1
COL7A1-209ENST00000474432 NAPAP54920 295 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 WDR5P61964 334 aaKnown RBP21.29■■□□□ 1
COL7A1-209ENST00000474432 SP4Q02446 784 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 MKRN4PQ13434 485 aaPredicted RBP21.29■■□□□ 1
COL7A1-209ENST00000474432 UTP14CQ5TAP6 766 aaKnown RBP21.29■■□□□ 1
COL7A1-209ENST00000474432 CNKSR3Q6P9H4 555 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 CYP2W1Q8TAV3 490 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 BRF1Q92994 677 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 ATP6V0A1Q93050 837 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 PGBD1Q96JS3 809 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 SETD4Q9NVD3 440 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 BARHL2Q9NY43 387 aa21.29■■□□□ 1
COL7A1-209ENST00000474432 CA3P07451 260 aa21.28■■□□□ 1
COL7A1-209ENST00000474432 DEFB103AP81534 67 aa21.28■■□□□ 1
COL7A1-209ENST00000474432 MTMR1Q13613 665 aa21.28■■□□□ 1
COL7A1-209ENST00000474432 PPP2R2DQ66LE6 453 aa21.28■■□□□ 1
COL7A1-209ENST00000474432 TMCO2Q7Z6W1 182 aaPredicted RBP21.28■■□□□ 1
COL7A1-209ENST00000474432 GIMAP8Q8ND71 665 aaPredicted RBP21.28■■□□□ 1
COL7A1-209ENST00000474432 TMEM260Q9NX78 707 aa21.28■■□□□ 1
COL7A1-209ENST00000474432 KAT6AQ92794 2004 aa21.28■■□□□ 1
COL7A1-209ENST00000474432 TRANK1O15050 2925 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 SMCO2A6NFE2 343 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 RPS6KB1P23443 525 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 TCF7P36402 384 aaPredicted RBP21.27■■□□□ 1
COL7A1-209ENST00000474432 PKN1Q16512 942 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 BLOC1S2Q6QNY1 142 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 TEX2Q8IWB9 1127 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 CDHR1Q96JP9 859 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 MXRA8Q9BRK3 442 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms