RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	PITPNM1	O00562	1244 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	MAFG	O15525	162 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	TOB2	Q14106	344 aa	Predicted RBP	12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	HERVK_113	Q902F9	699 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	CTAGE1	Q96RT6	745 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	GPR20	Q99678	358 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	TUT1	Q9H6E5	874 aa	Known RBP	12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	JADE2	Q9NQC1	790 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	GTF2IRD1	Q9UHL9	959 aa		12.81	□□□□□ -0.36
CKS1B-206	ENST00000474215	ATP9A	O75110	1047 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	RFC2	P35250	354 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	AKAP17A	Q02040	695 aa	Known RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	C1QBP	Q07021	282 aa	Known RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	MTMR1	Q13613	665 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	NTRK3	Q16288	839 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	PKN1	Q16512	942 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	CCDC155	Q8N6L0	562 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	CCDC12	Q8WUD4	166 aa	Predicted RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	PHKB	Q93100	1093 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	VWCE	Q96DN2	955 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	ZNF274	Q96GC6	653 aa	Predicted RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	UPF3B	Q9BZI7	483 aa	Known RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	MTIF3	Q9H2K0	278 aa	Known RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	NCOA5	Q9HCD5	579 aa	Known RBP	12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	TMEM260	Q9NX78	707 aa		12.8	□□□□□ -0.36
CKS1B-206	ENST00000474215	LGALS2	P05162	132 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	PFKM	P08237	780 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	IQCF3	P0C7M6	154 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	KCNA2	P16389	499 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	IFNAR1	P17181	557 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	CLK2	P49760	499 aa	Known RBP	12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	CCT2	P78371	535 aa	Known RBP	12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	PTK7	Q13308	1070 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	AP3B2	Q13367	1082 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	ZNF697	Q5TEC3	545 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	MCTP2	Q6DN12	878 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	OTOP2	Q7RTS6	562 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	DEFB128	Q7Z7B8	93 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	CAGE1	Q8TC20	777 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	MXRA8	Q9BRK3	442 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	RNF26	Q9BY78	433 aa	Predicted RBP	12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	ANO3	Q9BYT9	981 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	ZMYND12	Q9H0C1	365 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	SEMA6B	Q9H3T3	888 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	C6orf50	Q9HD87	102 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	PDRG1	Q9NUG6	133 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	CXXC1	Q9P0U4	656 aa	Predicted RBP	12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	TELO2	Q9Y4R8	837 aa		12.79	□□□□□ -0.36
CKS1B-206	ENST00000474215	ESYT2	A0FGR8	921 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	EIF5B	O60841	1220 aa	Known RBP	12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	PPFIA3	O75145	1194 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	SREBF1	P36956	1147 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	ZNF200	P98182	395 aa	Predicted RBP	12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	SP4	Q02446	784 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	RBL2	Q08999	1139 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	HIC1	Q14526	733 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	CEP55	Q53EZ4	464 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	JAKMIP3	Q5VZ66	844 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	CYP2W1	Q8TAV3	490 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	AFAP1L1	Q8TED9	768 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	SEPT1	Q8WYJ6	367 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	DHX38	Q92620	1227 aa	Known RBP	12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	PGBD1	Q96JS3	809 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	FAM161B	Q96MY7	647 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	LARP6	Q9BRS8	491 aa	Known RBP	12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	SLC26A6	Q9BXS9	759 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	KCNH7	Q9NS40	1196 aa		12.78	□□□□□ -0.36
CKS1B-206	ENST00000474215	GSTTP1	A0A1W2PQM5	241 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	C17orf102	A2RUQ5	167 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	GRXCR1	A8MXD5	290 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	MEIS1	O00470	390 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	SMIM10L2A	P0DMW4	78 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	SMIM10L2B	P0DMW5	78 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	CKB	P12277	381 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	ACTN1	P12814	892 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	SELP	P16109	830 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	DNAJB2	P25686	324 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	GNA11	P29992	359 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	TCF7	P36402	384 aa	Predicted RBP	12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	ZNF76	P36508	570 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	ANAPC15	P60006	121 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	ARHGAP4	P98171	946 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	UTP14C	Q5TAP6	766 aa	Known RBP	12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	SERINC5	Q86VE9	423 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	TRIM22	Q8IYM9	498 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	FTO	Q9C0B1	505 aa	Known RBP eCLIP	12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	RNPEP	Q9H4A4	650 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	PKD2L1	Q9P0L9	805 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	ZNF215	Q9UL58	517 aa	Predicted RBP	12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	STXBP5L	Q9Y2K9	1186 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	SLC4A7	Q9Y6M7	1214 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	MYH7B	A7E2Y1	1941 aa		12.77	□□□□□ -0.37
CKS1B-206	ENST00000474215	TMEM265	A0A087WTH1	108 aa		12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	CPLX1	O14810	134 aa		12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	ADAMTS3	O15072	1205 aa		12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	PARN	O95453	639 aa	Known RBP	12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	AR	P10275	920 aa		12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	GNAT1	P11488	350 aa		12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	HOXC8	P31273	242 aa		12.76	□□□□□ -0.37
CKS1B-206	ENST00000474215	SSRP1	Q08945	709 aa	Known RBP	12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms