RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 NOD1Q9Y239 953 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 PCDHA11Q9Y5I1 949 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 TRIOO75962 3097 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 TRIP12Q14669 1992 aaPredicted RBP9.33□□□□□ -0.92
USP48-207ENST00000471752 GSTTP1A0A1W2PQM5 241 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 ERICH2A1L162 156 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 B4DLN1 442 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 DTNBO60941 627 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 CXCL10P02778 98 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 LGALS2P05162 132 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 SMIM10L2AP0DMW4 78 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 SMIM10L2BP0DMW5 78 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 ITGB5P18084 799 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 CCND2P30279 289 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 NT5C2P49902 561 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 MRPL12P52815 198 aaKnown RBP9.33□□□□□ -0.92
USP48-207ENST00000471752 WDR5P61964 334 aaKnown RBP9.33□□□□□ -0.92
USP48-207ENST00000471752 RAB30Q15771 203 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 NFXL1Q6ZNB6 911 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 RUFY4Q6ZNE9 571 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 LRRC8DQ7L1W4 858 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 FANCBQ8NB91 859 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 ARNTL2Q8WYA1 636 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 SPZ1Q9BXG8 430 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 MLXIPQ9HAP2 919 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 MTUS1Q9ULD2 1270 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 MTCH2Q9Y6C9 303 aa9.33□□□□□ -0.92
USP48-207ENST00000471752 FRMPD4Q14CM0 1322 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 H3BRB1 525 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 LGR5O75473 907 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 CTSHP09668 335 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 CDC27P30260 824 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 HOXC8P31273 242 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 ICAM3P32942 547 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 MCM5P33992 734 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 THPOP40225 353 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 PTK7Q13308 1070 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 BFSP2Q13515 415 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 WWC2Q6AWC2 1192 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 TMTC3Q6ZXV5 915 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 SERINC5Q86VE9 423 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 DBF4BQ8NFT6 615 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 AFAP1L1Q8TED9 768 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 RRP36Q96EU6 259 aaKnown RBP9.32□□□□□ -0.92
USP48-207ENST00000471752 PCYT2Q99447 389 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 GAS2L1Q99501 681 aaPredicted RBP9.32□□□□□ -0.92
USP48-207ENST00000471752 MAF1Q9H063 256 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 TUT1Q9H6E5 874 aaKnown RBP9.32□□□□□ -0.92
USP48-207ENST00000471752 TMEM260Q9NX78 707 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 RAPGEFL1Q9UHV5 662 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 BRWD1Q9NSI6 2320 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 GBF1Q92538 1859 aa9.32□□□□□ -0.92
USP48-207ENST00000471752 CCDC69A6NI79 296 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 DDAH1O94760 285 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 ARP10275 920 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 KCNA2P16389 499 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 RFC2P35250 354 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 ADD1P35611 737 aaKnown RBP9.31□□□□□ -0.92
USP48-207ENST00000471752 LIFRP42702 1097 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 KCNQ1P51787 676 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 ADAM17P78536 824 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 RBL2Q08999 1139 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 GRB10Q13322 594 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 SART3Q15020 963 aaKnown RBP9.31□□□□□ -0.92
USP48-207ENST00000471752 CASC1Q6TDU7 716 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 MICU3Q86XE3 530 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 CTCFLQ8NI51 663 aaPredicted RBP9.31□□□□□ -0.92
USP48-207ENST00000471752 SMARCC2Q8TAQ2 1214 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 CAGE1Q8TC20 777 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 ATP6V0A1Q93050 837 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 MAP3K14Q99558 947 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 PSTPIP2Q9H939 334 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 MAP3K20Q9NYL2 800 aaKnown RBP9.31□□□□□ -0.92
USP48-207ENST00000471752 V9GY48 417 aaPredicted RBP9.31□□□□□ -0.92
USP48-207ENST00000471752 C5orf42Q9H799 3197 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 MYO7AQ13402 2215 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 MYH7BA7E2Y1 1941 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 KIAA1217Q5T5P2 1943 aa9.31□□□□□ -0.92
USP48-207ENST00000471752 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.3□□□□□ -0.92
USP48-207ENST00000471752 C17orf102A2RUQ5 167 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 LINC01553A4QN01 128 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 RSPH10B2B2RC85 870 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 PIK3CDO00329 1044 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 TLL1O43897 1013 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 CHRNA1P02708 482 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 RSPH10BP0C881 870 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 TGFB3P10600 412 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 MARK3P27448 753 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 BMP2KLQ5H9B9 411 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 MARCH8Q5T0T0 291 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 PCNX4Q63HM2 1172 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 CNKSR3Q6P9H4 555 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 METTL7BQ6UX53 244 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 HEATR3Q7Z4Q2 680 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 SGMS1Q86VZ5 419 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 GDPD5Q8WTR4 605 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 TRAPPC12Q8WVT3 735 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 NEK1Q96PY6 1258 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 LARP6Q9BRS8 491 aaKnown RBP9.3□□□□□ -0.92
USP48-207ENST00000471752 C17orf80Q9BSJ5 609 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms