RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 FAM173BQ6P4H8 233 aa17.18■□□□□ 0.34
NPHP4-205ENST00000466897 FOXD4L4Q8WXT5 416 aaPredicted RBP17.18■□□□□ 0.34
NPHP4-205ENST00000466897 HAS1Q92839 578 aa17.18■□□□□ 0.34
NPHP4-205ENST00000466897 SDF4Q9BRK5 362 aa17.18■□□□□ 0.34
NPHP4-205ENST00000466897 UPF3AQ9H1J1 476 aaKnown RBP17.18■□□□□ 0.34
NPHP4-205ENST00000466897 CFAP45Q9UL16 551 aa17.18■□□□□ 0.34
NPHP4-205ENST00000466897 DHX15O43143 795 aaKnown RBP17.17■□□□□ 0.34
NPHP4-205ENST00000466897 PSMD10O75832 226 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 FARP2O94887 1054 aaPredicted RBP17.17■□□□□ 0.34
NPHP4-205ENST00000466897 YEATS4O95619 227 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 GGPS1O95749 300 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 RARBP10826 455 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 CCL5P13501 91 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 CNGA1P29973 690 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 ARHGAP1Q07960 439 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 PTGDRQ13258 359 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 PTPAQ15257 358 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 SF3A1Q15459 793 aaKnown RBP17.17■□□□□ 0.34
NPHP4-205ENST00000466897 B3GNT9Q6UX72 402 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 TLK2Q86UE8 772 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 USP28Q96RU2 1077 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 UNC93B1Q9H1C4 597 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 TMEM60Q9H2L4 133 aa17.17■□□□□ 0.34
NPHP4-205ENST00000466897 LOXHD1Q8IVV2 1947 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 GJA9P57773 515 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 KRT85P78386 507 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 KRT76Q01546 638 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 PPP2R5CQ13362 524 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 LRCH2Q5VUJ6 765 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 LHX8Q68G74 356 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 ZNF746Q6NUN9 644 aaPredicted RBP17.16■□□□□ 0.34
NPHP4-205ENST00000466897 DHX37Q8IY37 1157 aaKnown RBP17.16■□□□□ 0.34
NPHP4-205ENST00000466897 PPTC7Q8NI37 304 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 TEKT3Q9BXF9 490 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 JPH1Q9HDC5 661 aaPredicted RBP17.16■□□□□ 0.34
NPHP4-205ENST00000466897 CLIC4Q9Y696 253 aa17.16■□□□□ 0.34
NPHP4-205ENST00000466897 GAS7O60861 476 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 HOXD8P13378 290 aaPredicted RBP17.15■□□□□ 0.34
NPHP4-205ENST00000466897 CST5P28325 142 aaPredicted RBP17.15■□□□□ 0.34
NPHP4-205ENST00000466897 FXR2P51116 673 aaKnown RBP eCLIP17.15■□□□□ 0.34
NPHP4-205ENST00000466897 DNM1Q05193 864 aaKnown RBP17.15■□□□□ 0.34
NPHP4-205ENST00000466897 SLC39A14Q15043 492 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 MTFR1Q15390 333 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 TMEM63BQ5T3F8 832 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 SMAP1Q8IYB5 467 aaPredicted RBP17.15■□□□□ 0.34
NPHP4-205ENST00000466897 LINC00301Q8NCQ3 95 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 RDM1Q8NG50 284 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 RNF208Q9H0X6 261 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 MLXIPQ9HAP2 919 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 SLC9A2Q9UBY0 812 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 TCEAL9Q9UHQ7 104 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 VAV3Q9UKW4 847 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 PCDHA12Q9UN75 941 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 SYNRGQ9UMZ2 1314 aa17.15■□□□□ 0.34
NPHP4-205ENST00000466897 A6NJR5 290 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 MARCH6O60337 910 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 ADAMTS4O75173 837 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 GJB1P08034 283 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 SFNP31947 248 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 SPIRE1Q08AE8 756 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 CYFIP1Q7L576 1253 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 OR6J1Q8NGC5 347 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 COPS5Q92905 334 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 FERMT2Q96AC1 680 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 FTOQ9C0B1 505 aaKnown RBP eCLIP17.14■□□□□ 0.33
NPHP4-205ENST00000466897 AP5M1Q9H0R1 490 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 TTC12Q9H892 705 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-205ENST00000466897 SPC25Q9HBM1 224 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 XPNPEP3Q9NQH7 507 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 ELP1O95163 1332 aa17.14■□□□□ 0.33
NPHP4-205ENST00000466897 POTEFA5A3E0 1075 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 CTAGE5O15320 804 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 PPP6R2O75170 966 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 ATG7O95352 703 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 TXKP42681 527 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 CPT1AP50416 773 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 PDIA5Q14554 519 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 TMEM266Q2M3C6 531 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 BRDTQ58F21 947 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-205ENST00000466897 GJC2Q5T442 439 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-205ENST00000466897 DTHD1Q6ZMT9 781 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 KLHDC9Q8NEP7 349 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 KCNG4Q8TDN1 519 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 LENG1Q96BZ8 264 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-205ENST00000466897 SPATA33Q96N06 139 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 RAB34Q9BZG1 259 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 SCAND2PQ9GZW5 306 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-205ENST00000466897 CRISPLD2Q9H0B8 497 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 PKD2L1Q9P0L9 805 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 SCN10AQ9Y5Y9 1956 aa17.13■□□□□ 0.33
NPHP4-205ENST00000466897 BRCA2P51587 3418 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 WDR64B1ANS9 1081 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 DYNC1LI2O43237 492 aaPredicted RBP17.12■□□□□ 0.33
NPHP4-205ENST00000466897 CCNE2O96020 404 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 JAK3P52333 1124 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 STK38Q15208 465 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 FSCN1Q16658 493 aaKnown RBP17.12■□□□□ 0.33
NPHP4-205ENST00000466897 HSDL1Q3SXM5 330 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 CLEC17AQ6ZS10 378 aa17.12■□□□□ 0.33
NPHP4-205ENST00000466897 IGSF22Q8N9C0 903 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms