RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 GJB5O95377 273 aa23.83■■□□□ 1.41
COL6A1-203ENST00000466285 SMIM10L2AP0DMW4 78 aa23.83■■□□□ 1.41
COL6A1-203ENST00000466285 SMIM10L2BP0DMW5 78 aa23.83■■□□□ 1.41
COL6A1-203ENST00000466285 hCG_1642624A0A1W2PR95 340 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 ERICH2A1L162 156 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 LINC01553A4QN01 128 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 PPFIA4O75335 1185 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 CTSHP09668 335 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 THPOP40225 353 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 CYFIP1Q7L576 1253 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 DBF4BQ8NFT6 615 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 RUFY2Q8WXA3 655 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 MLXIPQ9HAP2 919 aa23.82■■□□□ 1.4
COL6A1-203ENST00000466285 SPATA31C2B4DYI2 1134 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 H3BRB1 525 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 MEIS2O14770 477 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 GTPBP6O43824 516 aaPredicted RBP23.81■■□□□ 1.4
COL6A1-203ENST00000466285 LGR5O75473 907 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 SP4Q02446 784 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 CATIPQ7Z7H3 387 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 GPR20Q99678 358 aa23.81■■□□□ 1.4
COL6A1-203ENST00000466285 LSG1Q9H089 658 aaKnown RBP23.81■■□□□ 1.4
COL6A1-203ENST00000466285 TUT1Q9H6E5 874 aaKnown RBP23.81■■□□□ 1.4
COL6A1-203ENST00000466285 ABHD14A-ACY1A0A1B0GW23 586 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 C17orf102A2RUQ5 167 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 KIF28PB7ZC32 967 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 SH2B2O14492 632 aaPredicted RBP23.8■■□□□ 1.4
COL6A1-203ENST00000466285 PRC1O43663 620 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 ICAM3P32942 547 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 KCNV1Q6PIU1 500 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 SRBD1Q8N5C6 995 aaKnown RBP23.8■■□□□ 1.4
COL6A1-203ENST00000466285 SAMD3Q8N6K7 520 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 ATP6V0A1Q93050 837 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 ZBED2Q9BTP6 218 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 SPZ1Q9BXG8 430 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 LRRC2Q9BYS8 371 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 RNPEPQ9H4A4 650 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 SUGCTQ9HAC7 445 aa23.8■■□□□ 1.4
COL6A1-203ENST00000466285 METTL7BQ6UX53 244 aa23.79■■□□□ 1.4
COL6A1-203ENST00000466285 C17orf80Q9BSJ5 609 aa23.79■■□□□ 1.4
COL6A1-203ENST00000466285 SETD4Q9NVD3 440 aa23.79■■□□□ 1.4
COL6A1-203ENST00000466285 COL4A6Q14031 1691 aa23.79■■□□□ 1.4
COL6A1-203ENST00000466285 RSPH10B2B2RC85 870 aa23.78■■□□□ 1.4
COL6A1-203ENST00000466285 DDAH1O94760 285 aa23.78■■□□□ 1.4
COL6A1-203ENST00000466285 RSPH10BP0C881 870 aa23.78■■□□□ 1.4
COL6A1-203ENST00000466285 TGFB3P10600 412 aa23.78■■□□□ 1.4
COL6A1-203ENST00000466285 SART3Q15020 963 aaKnown RBP23.78■■□□□ 1.4
COL6A1-203ENST00000466285 UBE2SQ16763 222 aa23.78■■□□□ 1.4
COL6A1-203ENST00000466285 KAT6AQ92794 2004 aa23.77■■□□□ 1.4
COL6A1-203ENST00000466285 FIBPO43427 364 aa23.77■■□□□ 1.4
COL6A1-203ENST00000466285 IKBKEQ14164 716 aa23.77■■□□□ 1.4
COL6A1-203ENST00000466285 PLEKHG4Q58EX7 1191 aa23.77■■□□□ 1.4
COL6A1-203ENST00000466285 UTP14CQ5TAP6 766 aaKnown RBP23.77■■□□□ 1.4
COL6A1-203ENST00000466285 LMBR1Q8WVP7 490 aa23.77■■□□□ 1.4
COL6A1-203ENST00000466285 RAD9AQ99638 391 aa23.77■■□□□ 1.4
COL6A1-203ENST00000466285 NOP56O00567 594 aaKnown RBP23.76■■□□□ 1.39
COL6A1-203ENST00000466285 SLC27A2O14975 620 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 ATP9AO75110 1047 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 PARNO95453 639 aaKnown RBP23.76■■□□□ 1.39
COL6A1-203ENST00000466285 COL9A1P20849 921 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 ERVK-21P61565 698 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 PCNX4Q63HM2 1172 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 RUFY4Q6ZNE9 571 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 MYOCDQ8IZQ8 938 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 IL27Q8NEV9 243 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 SMARCC2Q8TAQ2 1214 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 ZBTB10Q96DT7 871 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 RRP36Q96EU6 259 aaKnown RBP23.76■■□□□ 1.39
COL6A1-203ENST00000466285 TSPYL2Q9H2G4 693 aaPredicted RBP23.76■■□□□ 1.39
COL6A1-203ENST00000466285 RALGAPA2Q2PPJ7 1873 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 LOXHD1Q8IVV2 1947 aa23.76■■□□□ 1.39
COL6A1-203ENST00000466285 KIAA1671Q9BY89 1806 aa23.75■■□□□ 1.39
COL6A1-203ENST00000466285 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.75■■□□□ 1.39
COL6A1-203ENST00000466285 ADAM17P78536 824 aa23.75■■□□□ 1.39
COL6A1-203ENST00000466285 GNPTABQ3T906 1256 aa23.75■■□□□ 1.39
COL6A1-203ENST00000466285 CTCFLQ8NI51 663 aaPredicted RBP23.75■■□□□ 1.39
COL6A1-203ENST00000466285 KHSRPQ92945 711 aaKnown RBP eCLIP23.75■■□□□ 1.39
COL6A1-203ENST00000466285 PKD2L1Q9P0L9 805 aa23.75■■□□□ 1.39
COL6A1-203ENST00000466285 KCNA2P16389 499 aa23.74■■□□□ 1.39
COL6A1-203ENST00000466285 ITGB5P18084 799 aa23.74■■□□□ 1.39
COL6A1-203ENST00000466285 HTRA4P83105 476 aaPredicted RBP23.74■■□□□ 1.39
COL6A1-203ENST00000466285 TGS1Q96RS0 853 aaKnown RBP23.74■■□□□ 1.39
COL6A1-203ENST00000466285 ESYT1Q9BSJ8 1104 aa23.74■■□□□ 1.39
COL6A1-203ENST00000466285 EMSYQ7Z589 1322 aa23.74■■□□□ 1.39
COL6A1-203ENST00000466285 PIK3CDO00329 1044 aa23.73■■□□□ 1.39
COL6A1-203ENST00000466285 ARHGAP4P98171 946 aa23.73■■□□□ 1.39
COL6A1-203ENST00000466285 TRAF1Q13077 416 aa23.73■■□□□ 1.39
COL6A1-203ENST00000466285 NEDD9Q14511 834 aa23.73■■□□□ 1.39
COL6A1-203ENST00000466285 CCDC82Q8N4S0 544 aa23.73■■□□□ 1.39
COL6A1-203ENST00000466285 SP7Q8TDD2 431 aaPredicted RBP23.73■■□□□ 1.39
COL6A1-203ENST00000466285 MAP3K14Q99558 947 aa23.73■■□□□ 1.39
COL6A1-203ENST00000466285 STAM2O75886 525 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 MARK3P27448 753 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 CREB3L3Q68CJ9 461 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 TYW1BQ6NUM6 668 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 CASC1Q6TDU7 716 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 NFXL1Q6ZNB6 911 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 HLA-CQ95604 372 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 TCEANC2Q96MN5 208 aa23.72■■□□□ 1.39
COL6A1-203ENST00000466285 MYO7AQ13402 2215 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms