RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 ADAMTS19Q8TE59 1207 aa15.62■□□□□ 0.09
CHD3-207ENST00000466233 ZBED2Q9BTP6 218 aa15.62■□□□□ 0.09
CHD3-207ENST00000466233 SENP2Q9HC62 589 aa15.62■□□□□ 0.09
CHD3-207ENST00000466233 INSL6Q9Y581 213 aa15.62■□□□□ 0.09
CHD3-207ENST00000466233 RBM8AQ9Y5S9 174 aaKnown RBP15.62■□□□□ 0.09
CHD3-207ENST00000466233 MEIS2O14770 477 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 PLEKHG4Q58EX7 1191 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 NLRX1Q86UT6 975 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 PPP1R13LQ8WUF5 828 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 ATP6V0A1Q93050 837 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 UHRF1Q96T88 793 aaPredicted RBP15.61■□□□□ 0.09
CHD3-207ENST00000466233 GPR20Q99678 358 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 ZNF215Q9UL58 517 aaPredicted RBP15.61■□□□□ 0.09
CHD3-207ENST00000466233 TET1Q8NFU7 2136 aa15.61■□□□□ 0.09
CHD3-207ENST00000466233 LPXNO60711 386 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 AMHP03971 560 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 SMIM10L2AP0DMW4 78 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 SMIM10L2BP0DMW5 78 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 ADAM17P78536 824 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 HTRA4P83105 476 aaPredicted RBP15.6■□□□□ 0.09
CHD3-207ENST00000466233 MBTPS1Q14703 1052 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 SMARCC2Q8TAQ2 1214 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 ARNTL2Q8WYA1 636 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 APBB2Q92870 758 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 GPRASP2Q96D09 838 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 SAMD11Q96NU1 681 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 TGS1Q96RS0 853 aaKnown RBP15.6■□□□□ 0.09
CHD3-207ENST00000466233 RNPEPQ9H4A4 650 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 TAF6LQ9Y6J9 622 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 MUC3AQ02505 3323 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 NRCAMQ92823 1304 aa15.6■□□□□ 0.09
CHD3-207ENST00000466233 TRIP12Q14669 1992 aaPredicted RBP15.59■□□□□ 0.09
CHD3-207ENST00000466233 EPOPA6NHQ4 379 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 PRC1O43663 620 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 THPOP40225 353 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 DEFB103AP81534 67 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 SEMA3FQ13275 785 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 GRB10Q13322 594 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 HIC1Q14526 733 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 NECTIN1Q15223 517 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 FAM26DQ5JW98 314 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 TAF2Q6P1X5 1199 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 SGMS1Q86VZ5 419 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 SP7Q8TDD2 431 aaPredicted RBP15.59■□□□□ 0.09
CHD3-207ENST00000466233 SEPT8Q92599 483 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 WNT8BQ93098 351 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 LSG1Q9H089 658 aaKnown RBP15.59■□□□□ 0.09
CHD3-207ENST00000466233 PSTPIP2Q9H939 334 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 NCOR1O75376 2440 aa15.59■□□□□ 0.09
CHD3-207ENST00000466233 CCDC69A6NI79 296 aa15.58■□□□□ 0.08
CHD3-207ENST00000466233 SH2B2O14492 632 aaPredicted RBP15.58■□□□□ 0.08
CHD3-207ENST00000466233 ARHGEF15O94989 841 aa15.58■□□□□ 0.08
CHD3-207ENST00000466233 ZNF200P98182 395 aaPredicted RBP15.58■□□□□ 0.08
CHD3-207ENST00000466233 CYFIP1Q7L576 1253 aa15.58■□□□□ 0.08
CHD3-207ENST00000466233 DBF4BQ8NFT6 615 aa15.58■□□□□ 0.08
CHD3-207ENST00000466233 GPKOWQ92917 476 aaPredicted RBP eCLIP15.58■□□□□ 0.08
CHD3-207ENST00000466233 HLA-CQ95604 372 aa15.58■□□□□ 0.08
CHD3-207ENST00000466233 TOP1MTQ969P6 601 aa15.58■□□□□ 0.08
CHD3-207ENST00000466233 LINC01553A4QN01 128 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 RNF20Q5VTR2 975 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 USP17L6PQ6QN14 398 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 SRBD1Q8N5C6 995 aaKnown RBP15.57■□□□□ 0.08
CHD3-207ENST00000466233 FANCBQ8NB91 859 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 TNPO1Q92973 898 aaKnown RBP15.57■□□□□ 0.08
CHD3-207ENST00000466233 SUGCTQ9HAC7 445 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 SLC12A7Q9Y666 1083 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 COL4A6Q14031 1691 aa15.57■□□□□ 0.08
CHD3-207ENST00000466233 PRRC2BQ5JSZ5 2229 aaKnown RBP15.56■□□□□ 0.08
CHD3-207ENST00000466233 LCHNA4D1U4 455 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 RFXAPO00287 272 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 SLC27A2O14975 620 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 TREHO43280 583 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 SKIV2LQ15477 1246 aaKnown RBP15.56■□□□□ 0.08
CHD3-207ENST00000466233 TSGA10IPQ3SY00 556 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 NFXL1Q6ZNB6 911 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 SEPT1Q8WYJ6 367 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 ESYT1Q9BSJ8 1104 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 EHMT1Q9H9B1 1298 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 CERS4Q9HA82 394 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 ERAP1Q9NZ08 941 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 RTEL1Q9NZ71 1219 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 UBIAD1Q9Y5Z9 338 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 MYH7BA7E2Y1 1941 aa15.56■□□□□ 0.08
CHD3-207ENST00000466233 hCG_1984214I3L0E3 225 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 KCNA2P16389 499 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 RCAN1P53805 252 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 TCTN1Q2MV58 587 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 BMP2KLQ5H9B9 411 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 CREB3L3Q68CJ9 461 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 TMTC3Q6ZXV5 915 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 RSPH3Q86UC2 560 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 MICALL1Q8N3F8 863 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 ZNF713Q8N859 430 aaPredicted RBP15.55■□□□□ 0.08
CHD3-207ENST00000466233 C1QTNF1Q9BXJ1 281 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 GLT8D2Q9H1C3 349 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 BCAS3Q9H6U6 928 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 SETD4Q9NVD3 440 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 RBM28Q9NW13 759 aaKnown RBP15.55■□□□□ 0.08
CHD3-207ENST00000466233 SQORQ9Y6N5 450 aa15.55■□□□□ 0.08
CHD3-207ENST00000466233 BAZ2BQ9UIF8 2168 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms