RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CYFIP1Q7L576 1253 aa22.46■■□□□ 1.19
COL9A3-204ENST00000463487 CYP2W1Q8TAV3 490 aa22.46■■□□□ 1.19
COL9A3-204ENST00000463487 TNFRSF25Q93038 417 aa22.46■■□□□ 1.19
COL9A3-204ENST00000463487 ZNF577Q9BSK1 485 aa22.46■■□□□ 1.19
COL9A3-204ENST00000463487 AGO4Q9HCK5 861 aaKnown RBP22.46■■□□□ 1.19
COL9A3-204ENST00000463487 NFASCO94856 1347 aa22.46■■□□□ 1.19
COL9A3-204ENST00000463487 ELP1O95163 1332 aa22.46■■□□□ 1.19
COL9A3-204ENST00000463487 CYP3A7-CYP3A51PA0A087WV96 503 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 IPO5O00410 1097 aaKnown RBP22.45■■□□□ 1.18
COL9A3-204ENST00000463487 CYP3A7P24462 503 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 Q4G0T1 1027 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 MCTP1Q6DN14 999 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 PPP4R3AQ6IN85 833 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 NOSTRINQ8IVI9 506 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 FERMT2Q96AC1 680 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 MTG1Q9BT17 334 aaPredicted RBP22.45■■□□□ 1.18
COL9A3-204ENST00000463487 SEZ6LQ9BYH1 1024 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 JPH1Q9HDC5 661 aaPredicted RBP22.45■■□□□ 1.18
COL9A3-204ENST00000463487 TBC1D22BQ9NU19 505 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 PKD2L1Q9P0L9 805 aa22.45■■□□□ 1.18
COL9A3-204ENST00000463487 DDX25Q9UHL0 483 aaKnown RBP22.45■■□□□ 1.18
COL9A3-204ENST00000463487 NOL7Q9UMY1 257 aaKnown RBP22.45■■□□□ 1.18
COL9A3-204ENST00000463487 CCNT1O60563 726 aaKnown RBP22.44■■□□□ 1.18
COL9A3-204ENST00000463487 PPFIA4O75335 1185 aa22.44■■□□□ 1.18
COL9A3-204ENST00000463487 ARP10275 920 aa22.44■■□□□ 1.18
COL9A3-204ENST00000463487 PTGS1P23219 599 aa22.44■■□□□ 1.18
COL9A3-204ENST00000463487 CXCL17Q6UXB2 119 aa22.44■■□□□ 1.18
COL9A3-204ENST00000463487 KATNAL1Q9BW62 490 aa22.44■■□□□ 1.18
COL9A3-204ENST00000463487 SLC9A2Q9UBY0 812 aa22.44■■□□□ 1.18
COL9A3-204ENST00000463487 SORBS3O60504 671 aa22.43■■□□□ 1.18
COL9A3-204ENST00000463487 ATP9AO75110 1047 aa22.43■■□□□ 1.18
COL9A3-204ENST00000463487 PDIA4P13667 645 aaKnown RBP22.43■■□□□ 1.18
COL9A3-204ENST00000463487 IRX5P78411 483 aaPredicted RBP22.43■■□□□ 1.18
COL9A3-204ENST00000463487 PURAQ00577 322 aaKnown RBP22.43■■□□□ 1.18
COL9A3-204ENST00000463487 MLLT1Q03111 559 aaPredicted RBP22.43■■□□□ 1.18
COL9A3-204ENST00000463487 HSDL1Q3SXM5 330 aa22.43■■□□□ 1.18
COL9A3-204ENST00000463487 MROH7Q68CQ1 1323 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 A0A0U1RQG5 324 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-204ENST00000463487 MARCH6O60337 910 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 TDP2O95551 362 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 U2AF2P26368 475 aaKnown RBP eCLIP22.42■■□□□ 1.18
COL9A3-204ENST00000463487 TRAPPC10P48553 1259 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 SP4Q02446 784 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 RIT2Q99578 217 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 FOXD4L1Q9NU39 408 aa22.42■■□□□ 1.18
COL9A3-204ENST00000463487 ATN1P54259 1190 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-204ENST00000463487 C1orf53Q5VUE5 145 aa22.41■■□□□ 1.18
COL9A3-204ENST00000463487 SLC39A5Q6ZMH5 540 aa22.41■■□□□ 1.18
COL9A3-204ENST00000463487 SEPT1Q8WYJ6 367 aa22.41■■□□□ 1.18
COL9A3-204ENST00000463487 LENG9Q96B70 501 aa22.41■■□□□ 1.18
COL9A3-204ENST00000463487 MBOAT7Q96N66 472 aa22.41■■□□□ 1.18
COL9A3-204ENST00000463487 GPR20Q99678 358 aa22.41■■□□□ 1.18
COL9A3-204ENST00000463487 ZNF215Q9UL58 517 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-204ENST00000463487 VPS37CA5D8V6 355 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-204ENST00000463487 TBX3O15119 743 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 GAS7O60861 476 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 BAG4O95429 457 aaKnown RBP22.4■■□□□ 1.18
COL9A3-204ENST00000463487 HOXD8P13378 290 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-204ENST00000463487 KRT76Q01546 638 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 ORC2Q13416 577 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-204ENST00000463487 EARS2Q5JPH6 523 aaKnown RBP22.4■■□□□ 1.18
COL9A3-204ENST00000463487 SLFN12Q8IYM2 578 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 DPF3Q92784 378 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 FAM20AQ96MK3 541 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 TEKT3Q9BXF9 490 aa22.4■■□□□ 1.18
COL9A3-204ENST00000463487 FAM205CA6NFA0 338 aa22.39■■□□□ 1.17
COL9A3-204ENST00000463487 MSH4O15457 936 aa22.39■■□□□ 1.17
COL9A3-204ENST00000463487 EVI5O60447 810 aa22.39■■□□□ 1.17
COL9A3-204ENST00000463487 NEMFO60524 1076 aa22.39■■□□□ 1.17
COL9A3-204ENST00000463487 ITGB3BPQ13352 177 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-204ENST00000463487 LRCH2Q5VUJ6 765 aa22.39■■□□□ 1.17
COL9A3-204ENST00000463487 ZNF746Q6NUN9 644 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-204ENST00000463487 AZI2Q9H6S1 392 aa22.39■■□□□ 1.17
COL9A3-204ENST00000463487 DDX39AO00148 427 aaKnown RBP22.38■■□□□ 1.17
COL9A3-204ENST00000463487 F2P00734 622 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 TCF7P36402 384 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-204ENST00000463487 ACTR2P61160 394 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 ITGA7Q13683 1181 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 SNX17Q15036 470 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 BRAPQ7Z569 592 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 SMAP1Q8IYB5 467 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-204ENST00000463487 SLC5A5Q92911 643 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 NR2E3Q9Y5X4 410 aa22.38■■□□□ 1.17
COL9A3-204ENST00000463487 ARVCFO00192 962 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 TLR3O15455 904 aaKnown RBP22.37■■□□□ 1.17
COL9A3-204ENST00000463487 SLC37A4O43826 429 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 EDIL3O43854 480 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 LGALS2P05162 132 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 ZNF286BP0CG31 522 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 ATP2B1P20020 1258 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 RILPL1Q5EBL4 403 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 TTC38Q5R3I4 469 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 MIS18BP1Q6P0N0 1132 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 NFRKBQ6P4R8 1299 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 TNPO1Q92973 898 aaKnown RBP22.37■■□□□ 1.17
COL9A3-204ENST00000463487 BCAS3Q9H6U6 928 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 ATP11BQ9Y2G3 1177 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 SAMM50Q9Y512 469 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 DOCK5Q9H7D0 1870 aa22.37■■□□□ 1.17
COL9A3-204ENST00000463487 DCDC2CA8MYV0 355 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms