RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ICAM3P32942 547 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 FAM117BQ6P1L5 589 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.6■□□□□ 0.57
COL7A1-204ENST00000462475 ZNF654Q8IZM8 581 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 ATP6V0A1Q93050 837 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 TUT1Q9H6E5 874 aaKnown RBP18.6■□□□□ 0.57
COL7A1-204ENST00000462475 LY9Q9HBG7 655 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 RTEL1Q9NZ71 1219 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 MTUS1Q9ULD2 1270 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 TELO2Q9Y4R8 837 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 MYH7BA7E2Y1 1941 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 NCOR1O75376 2440 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 EMSYQ7Z589 1322 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 RSPH10B2B2RC85 870 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 SPATA31C2B4DYI2 1134 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 NOP56O00567 594 aaKnown RBP18.59■□□□□ 0.57
COL7A1-204ENST00000462475 DDAH1O94760 285 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 RSPH10BP0C881 870 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 MKRN4PQ13434 485 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-204ENST00000462475 COL9A3Q14050 684 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-204ENST00000462475 AAK1Q2M2I8 961 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 USP17L6PQ6QN14 398 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 METTL7BQ6UX53 244 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 CYFIP1Q7L576 1253 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 TRIM50Q86XT4 487 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 DBF4BQ8NFT6 615 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 SPZ1Q9BXG8 430 aa18.59■□□□□ 0.57
COL7A1-204ENST00000462475 LINC01553A4QN01 128 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 TREHO43280 583 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 FIBPO43427 364 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 STAM2O75886 525 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 PLEKHA8P1O95397 391 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 NEDD9Q14511 834 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 CTCFLQ8NI51 663 aaPredicted RBP18.58■□□□□ 0.56
COL7A1-204ENST00000462475 RRP36Q96EU6 259 aaKnown RBP18.58■□□□□ 0.56
COL7A1-204ENST00000462475 MAP3K14Q99558 947 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 GPR20Q99678 358 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 RNPEPQ9H4A4 650 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 SUGCTQ9HAC7 445 aa18.58■□□□□ 0.56
COL7A1-204ENST00000462475 MEIS2O14770 477 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 PRC1O43663 620 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 CTSHP09668 335 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 KIF5BP33176 963 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 ERVK-21P61565 698 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 MYOCDQ8IZQ8 938 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 SMARCC2Q8TAQ2 1214 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 TGS1Q96RS0 853 aaKnown RBP18.57■□□□□ 0.56
COL7A1-204ENST00000462475 USP26Q9BXU7 913 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 OSBPL7Q9BZF2 842 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 COG5Q9UP83 839 aa18.57■□□□□ 0.56
COL7A1-204ENST00000462475 SH2B2O14492 632 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-204ENST00000462475 RXRAP19793 462 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 SP4Q02446 784 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 PLEKHG4Q58EX7 1191 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 UTP14CQ5TAP6 766 aaKnown RBP18.56■□□□□ 0.56
COL7A1-204ENST00000462475 PCNX4Q63HM2 1172 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 CASC1Q6TDU7 716 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 CMTR1Q8N1G2 835 aaKnown RBP18.56■□□□□ 0.56
COL7A1-204ENST00000462475 SRBD1Q8N5C6 995 aaKnown RBP18.56■□□□□ 0.56
COL7A1-204ENST00000462475 CUL5Q93034 780 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 HLA-CQ95604 372 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 SETD4Q9NVD3 440 aa18.56■□□□□ 0.56
COL7A1-204ENST00000462475 SEC63Q9UGP8 760 aaKnown RBP18.56■□□□□ 0.56
COL7A1-204ENST00000462475 TCF20Q9UGU0 1960 aaKnown RBP18.55■□□□□ 0.56
COL7A1-204ENST00000462475 PIK3CDO00329 1044 aa18.55■□□□□ 0.56
COL7A1-204ENST00000462475 AMHP03971 560 aa18.55■□□□□ 0.56
COL7A1-204ENST00000462475 COL9A1P20849 921 aa18.55■□□□□ 0.56
COL7A1-204ENST00000462475 RAB11FIP4Q86YS3 637 aa18.55■□□□□ 0.56
COL7A1-204ENST00000462475 LSG1Q9H089 658 aaKnown RBP18.55■□□□□ 0.56
COL7A1-204ENST00000462475 SMARCA1P28370 1054 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 HTRA4P83105 476 aaPredicted RBP18.54■□□□□ 0.56
COL7A1-204ENST00000462475 XRRA1Q6P2D8 792 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 NFXL1Q6ZNB6 911 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 LMBR1Q8WVP7 490 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 SENP7Q9BQF6 1050 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 LZTS2Q9BRK4 669 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 C17orf80Q9BSJ5 609 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 MTA3Q9BTC8 594 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 LMCD1Q9NZU5 365 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 RAPGEFL1Q9UHV5 662 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 ZNF215Q9UL58 517 aaPredicted RBP18.54■□□□□ 0.56
COL7A1-204ENST00000462475 INSL6Q9Y581 213 aa18.54■□□□□ 0.56
COL7A1-204ENST00000462475 hCG_1642624A0A1W2PR95 340 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 CCDC69A6NI79 296 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 SLC27A2O14975 620 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 CAND2O75155 1236 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 MCM5P33992 734 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 ADAM17P78536 824 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 ARHGAP4P98171 946 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 SP7Q8TDD2 431 aaPredicted RBP18.53■□□□□ 0.56
COL7A1-204ENST00000462475 SEPT8Q92599 483 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 DOCK5Q9H7D0 1870 aa18.53■□□□□ 0.56
COL7A1-204ENST00000462475 MICAL3Q7RTP6 2002 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 ATP9AO75110 1047 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 GNAT1P11488 350 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 GNAQP50148 359 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 UBE2SQ16763 222 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 NLRX1Q86UT6 975 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 FBXO22Q8NEZ5 403 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 TMEM87BQ96K49 555 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms