RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 TRIM37O94972 964 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 CLTAP09496 248 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 CDC25CP30307 473 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 POLR2FP61218 127 aaKnown RBP11.31□□□□□ -0.6
CLIP4-208ENST00000456385 IFFO1Q0D2I5 559 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 MYO1EQ12965 1108 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 CUL1Q13616 776 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 KRT71Q3SY84 523 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 SFMBT2Q5VUG0 894 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 TBC1D22AQ8WUA7 517 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 NSMCE1Q8WV22 266 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 ANKS1AQ92625 1134 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 CUL5Q93034 780 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 KDM4CQ9H3R0 1056 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP4-208ENST00000456385 AMACRQ9UHK6 382 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 UBR2Q8IWV8 1755 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 MYMKA6NI61 221 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 BUB1BO60566 1050 aaPredicted RBP11.31□□□□□ -0.6
CLIP4-208ENST00000456385 SERPING1P05155 500 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 ITGA4P13612 1032 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 SLC18A3Q16572 532 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 LETM2Q2VYF4 491 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 LRRC55Q6ZSA7 311 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 HEATR3Q7Z4Q2 680 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 PNMA8AQ86V59 439 aaPredicted RBP11.31□□□□□ -0.6
CLIP4-208ENST00000456385 SCFD2Q8WU76 684 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 MMTAG2Q9BU76 263 aaKnown RBP11.31□□□□□ -0.6
CLIP4-208ENST00000456385 KCNG1Q9UIX4 513 aa11.31□□□□□ -0.6
CLIP4-208ENST00000456385 BAZ2AQ9UIF9 1905 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CCT8L1PA6NM43 557 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CCNT1O60563 726 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CTNND1O60716 968 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 FGRP09769 529 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CYP2D6P10635 497 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 SEMA3FQ13275 785 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 RPS6KA1Q15418 735 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 SLC35G1Q2M3R5 365 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 RCSD1Q6JBY9 416 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 TMC3Q7Z5M5 1100 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 TBC1D1Q86TI0 1168 aaPredicted RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 FMNL3Q8IVF7 1028 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 FAM133AQ8N9E0 248 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 ZNF384Q8TF68 577 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 TAF4BQ92750 862 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CHMP6Q96FZ7 201 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CELF4Q9BZC1 486 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 CUEDC2Q9H467 287 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 PNMA2Q9UL42 364 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 ATP6V0A2Q9Y487 856 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 DHX9Q08211 1270 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 RAPGEF1Q13905 1077 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 FAM133BQ5BKY9 247 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 AGBL2Q5U5Z8 902 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 TMED8Q6PL24 325 aaPredicted RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 PROSER2Q86WR7 435 aaPredicted RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 PSMD1Q99460 953 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 LSM14BQ9BX40 385 aaKnown RBP11.3□□□□□ -0.6
CLIP4-208ENST00000456385 MTFR1LQ9H019 292 aa11.3□□□□□ -0.6
CLIP4-208ENST00000456385 COL18A1P39060 1754 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 CAND2O75155 1236 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 KIF4AO95239 1232 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 ANP32DO95626 131 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 GHRP10912 638 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 PDE6BP35913 854 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 GYG1P46976 350 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 AMPD3Q01432 767 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 NBPF9Q3BBW0 867 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 ERMARDQ5T6L9 678 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 ARMC9Q7Z3E5 817 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP4-208ENST00000456385 RSRC1Q96IZ7 334 aaKnown RBP11.29□□□□□ -0.6
CLIP4-208ENST00000456385 XPO6Q96QU8 1125 aaKnown RBP11.29□□□□□ -0.6
CLIP4-208ENST00000456385 TRIM31Q9BZY9 425 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 DPH5Q9H2P9 285 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 MAGEF1Q9HAY2 307 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 PANK4Q9NVE7 773 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 CEP72Q9P209 647 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP4-208ENST00000456385 TNS2Q63HR2 1409 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 PLCH1Q4KWH8 1693 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 TSPY2A6NKD2 308 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 F8VZ95 297 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 KRIT1O00522 736 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 TTI1O43156 1089 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 CYTH3O43739 400 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 SHBGP04278 402 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 OR52Z1P0C646 297 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 PPP1R2P41236 205 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 KLHL30Q0D2K2 578 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 CCDC63Q8NA47 563 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 CCDC197Q8NCU1 140 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 SPDL1Q96EA4 605 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 ZNF317Q96PQ6 595 aaPredicted RBP11.29□□□□□ -0.6
CLIP4-208ENST00000456385 BRIP1Q9BX63 1249 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 CPVLQ9H3G5 476 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 EBF2Q9HAK2 575 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 BLOC1S4Q9NUP1 217 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 GGT7Q9UJ14 662 aa11.29□□□□□ -0.6
CLIP4-208ENST00000456385 SLC12A4Q9UP95 1085 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms