RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 AP3B2Q13367 1082 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 CYFIP1Q7L576 1253 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 CTAGE1Q96RT6 745 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 GPR20Q99678 358 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 TTYH1Q9H313 450 aaPredicted RBP20.47■□□□□ 0.87
MSH6-207ENST00000456246 TUT1Q9H6E5 874 aaKnown RBP20.47■□□□□ 0.87
MSH6-207ENST00000456246 FAM217BQ9NTX9 383 aaPredicted RBP20.47■□□□□ 0.87
MSH6-207ENST00000456246 CXXC1Q9P0U4 656 aaPredicted RBP20.47■□□□□ 0.87
MSH6-207ENST00000456246 MSRAQ9UJ68 235 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 SLC4A7Q9Y6M7 1214 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 COL6A3P12111 3177 aa20.47■□□□□ 0.87
MSH6-207ENST00000456246 STXBP3O00186 592 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 SELPP16109 830 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 APOBRQ0VD83 1088 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 MTMR1Q13613 665 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 MCTP2Q6DN12 878 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 LRRC8DQ7L1W4 858 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 DEFB128Q7Z7B8 93 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 CCDC12Q8WUD4 166 aaPredicted RBP20.46■□□□□ 0.87
MSH6-207ENST00000456246 CDX2Q99626 313 aaPredicted RBP20.46■□□□□ 0.87
MSH6-207ENST00000456246 PBX4Q9BYU1 374 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 UBIAD1Q9Y5Z9 338 aa20.46■□□□□ 0.87
MSH6-207ENST00000456246 ZBBXA8MT70 800 aa20.45■□□□□ 0.86
MSH6-207ENST00000456246 BAIAP3O94812 1187 aa20.45■□□□□ 0.86
MSH6-207ENST00000456246 CPA1P15085 419 aa20.45■□□□□ 0.86
MSH6-207ENST00000456246 ITGB5P18084 799 aa20.45■□□□□ 0.86
MSH6-207ENST00000456246 PFKFB3Q16875 520 aaPredicted RBP20.45■□□□□ 0.86
MSH6-207ENST00000456246 VWCEQ96DN2 955 aa20.45■□□□□ 0.86
MSH6-207ENST00000456246 FTOQ9C0B1 505 aaKnown RBP eCLIP20.45■□□□□ 0.86
MSH6-207ENST00000456246 JADE2Q9NQC1 790 aa20.45■□□□□ 0.86
MSH6-207ENST00000456246 SCN5AQ14524 2016 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 ESYT2A0FGR8 921 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 C17orf102A2RUQ5 167 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 SMCO2A6NFE2 343 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 CENPBP07199 599 aaPredicted RBP20.44■□□□□ 0.86
MSH6-207ENST00000456246 GNAT1P11488 350 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 CKBP12277 381 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 SCG2P13521 617 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 KCNA2P16389 499 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 HOXC8P31273 242 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 ADD1P35611 737 aaKnown RBP20.44■□□□□ 0.86
MSH6-207ENST00000456246 EVCP57679 992 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 TYW1BQ6NUM6 668 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 RUFY3Q7L099 469 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 DHX38Q92620 1227 aaKnown RBP20.44■□□□□ 0.86
MSH6-207ENST00000456246 SLC9A7Q96T83 725 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 ZNF576Q9H609 170 aa20.44■□□□□ 0.86
MSH6-207ENST00000456246 TRIP12Q14669 1992 aaPredicted RBP20.44■□□□□ 0.86
MSH6-207ENST00000456246 AKAP17AQ02040 695 aaKnown RBP20.43■□□□□ 0.86
MSH6-207ENST00000456246 SERINC5Q86VE9 423 aa20.43■□□□□ 0.86
MSH6-207ENST00000456246 PHOSPHO2Q8TCD6 241 aa20.43■□□□□ 0.86
MSH6-207ENST00000456246 ANO3Q9BYT9 981 aa20.43■□□□□ 0.86
MSH6-207ENST00000456246 TM6SF1Q9BZW5 370 aa20.43■□□□□ 0.86
MSH6-207ENST00000456246 ZSWIM6Q9HCJ5 1215 aa20.43■□□□□ 0.86
MSH6-207ENST00000456246 CYP46A1Q9Y6A2 500 aa20.43■□□□□ 0.86
MSH6-207ENST00000456246 DOCK5Q9H7D0 1870 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 GRXCR1A8MXD5 290 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 PRPF3O43395 683 aaKnown RBP20.42■□□□□ 0.86
MSH6-207ENST00000456246 CAND2O75155 1236 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 SMIM10L2AP0DMW4 78 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 SMIM10L2BP0DMW5 78 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 ATP2A2P16615 1042 aaKnown RBP20.42■□□□□ 0.86
MSH6-207ENST00000456246 SREBF1P36956 1147 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 SLC17A8Q8NDX2 589 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 SEPT1Q8WYJ6 367 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 ATP6V0A1Q93050 837 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 MXRA8Q9BRK3 442 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 RNF26Q9BY78 433 aaPredicted RBP20.42■□□□□ 0.86
MSH6-207ENST00000456246 BCAS3Q9H6U6 928 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 PCDHA11Q9Y5I1 949 aa20.42■□□□□ 0.86
MSH6-207ENST00000456246 EIF5BO60841 1220 aaKnown RBP20.41■□□□□ 0.86
MSH6-207ENST00000456246 CXCL10P02778 98 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 FOSL2P15408 326 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 PBX2P40425 430 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 CLK2P49760 499 aaKnown RBP20.41■□□□□ 0.86
MSH6-207ENST00000456246 SP4Q02446 784 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 TRIM71Q2Q1W2 868 aaKnown RBP20.41■□□□□ 0.86
MSH6-207ENST00000456246 ZMYND12Q9H0C1 365 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 SLC28A3Q9HAS3 691 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 C6orf50Q9HD87 102 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 EMSYQ7Z589 1322 aa20.41■□□□□ 0.86
MSH6-207ENST00000456246 EFCAB14O75071 495 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 ATP9AO75110 1047 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 NFASCO94856 1347 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 IFNAR1P17181 557 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 GNA11P29992 359 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 TCF7P36402 384 aaPredicted RBP20.4■□□□□ 0.86
MSH6-207ENST00000456246 CEP55Q53EZ4 464 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 UTP14CQ5TAP6 766 aaKnown RBP20.4■□□□□ 0.86
MSH6-207ENST00000456246 CNKSR3Q6P9H4 555 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 NIPA1Q7RTP0 329 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 CCDC148Q8NFR7 591 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 MYLIPQ8WY64 445 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 NRCAMQ92823 1304 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 SDF4Q9BRK5 362 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 JPH1Q9HDC5 661 aaPredicted RBP20.4■□□□□ 0.86
MSH6-207ENST00000456246 KCNH7Q9NS40 1196 aa20.4■□□□□ 0.86
MSH6-207ENST00000456246 TET1Q8NFU7 2136 aa20.39■□□□□ 0.86
MSH6-207ENST00000456246 CDH23Q9H251 3354 aa20.39■□□□□ 0.86
MSH6-207ENST00000456246 PDIA3P30101 505 aaKnown RBP20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms