RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 UTP14CQ5TAP6 766 aaKnown RBP17.75■□□□□ 0.43
LIMS1-210ENST00000449684 FBXL16Q8N461 479 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 TUT1Q9H6E5 874 aaKnown RBP17.75■□□□□ 0.43
LIMS1-210ENST00000449684 BCAS3Q9H6U6 928 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 PKD2L1Q9P0L9 805 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 ZNF215Q9UL58 517 aaPredicted RBP17.75■□□□□ 0.43
LIMS1-210ENST00000449684 MAFGO15525 162 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 DNAJB2P25686 324 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 CCT2P78371 535 aaKnown RBP17.74■□□□□ 0.43
LIMS1-210ENST00000449684 TYW1BQ6NUM6 668 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 AFAP1L1Q8TED9 768 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 PGBD1Q96JS3 809 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 GPR20Q99678 358 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 C16orf70Q9BSU1 422 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 SEMA6BQ9H3T3 888 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 ZSWIM6Q9HCJ5 1215 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 C6orf50Q9HD87 102 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 MSRAQ9UJ68 235 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 STXBP5LQ9Y2K9 1186 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 SLC4A7Q9Y6M7 1214 aa17.74■□□□□ 0.43
LIMS1-210ENST00000449684 LAMA2P24043 3122 aaKnown RBP17.74■□□□□ 0.43
LIMS1-210ENST00000449684 C17orf102A2RUQ5 167 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 PRPF3O43395 683 aaKnown RBP17.73■□□□□ 0.43
LIMS1-210ENST00000449684 EIF5BO60841 1220 aaKnown RBP17.73■□□□□ 0.43
LIMS1-210ENST00000449684 GNAT1P11488 350 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 PTK7Q13308 1070 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 AP3B2Q13367 1082 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 RASIP1Q5U651 963 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 PHKBQ93100 1093 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 TIFAQ96CG3 184 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 SLC26A6Q9BXS9 759 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 ANO3Q9BYT9 981 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 AGXT2Q9BYV1 514 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 UPF3BQ9BZI7 483 aaKnown RBP17.73■□□□□ 0.43
LIMS1-210ENST00000449684 TM6SF1Q9BZW5 370 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 JADE2Q9NQC1 790 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 UBIAD1Q9Y5Z9 338 aa17.73■□□□□ 0.43
LIMS1-210ENST00000449684 TMEM265A0A087WTH1 108 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 GRXCR1A8MXD5 290 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 CPLX1O14810 134 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 PARNO95453 639 aaKnown RBP17.72■□□□□ 0.43
LIMS1-210ENST00000449684 SELPP16109 830 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 ITGB5P18084 799 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 GNA11P29992 359 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 PDIA3P30101 505 aaKnown RBP17.72■□□□□ 0.43
LIMS1-210ENST00000449684 RAB30Q15771 203 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 JAKMIP3Q5VZ66 844 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 MCTP2Q6DN12 878 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 CPLX2Q6PUV4 134 aaKnown RBP17.72■□□□□ 0.43
LIMS1-210ENST00000449684 LRRC8DQ7L1W4 858 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 TRIM22Q8IYM9 498 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 SEPT1Q8WYJ6 367 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 ATP6V0A1Q93050 837 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 MXRA8Q9BRK3 442 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 SDF4Q9BRK5 362 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 PDRG1Q9NUG6 133 aa17.72■□□□□ 0.43
LIMS1-210ENST00000449684 CXXC1Q9P0U4 656 aaPredicted RBP17.72■□□□□ 0.43
LIMS1-210ENST00000449684 ATP9AO75110 1047 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 PPFIA3O75145 1194 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 SMIM10L2AP0DMW4 78 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 SMIM10L2BP0DMW5 78 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 CKBP12277 381 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 KCNA2P16389 499 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 TCF7P36402 384 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-210ENST00000449684 ZNF200P98182 395 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-210ENST00000449684 CCDC148Q8NFR7 591 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 BICD2Q8TD16 824 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 RNF26Q9BY78 433 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-210ENST00000449684 PBX4Q9BYU1 374 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 NCOA5Q9HCD5 579 aaKnown RBP17.71■□□□□ 0.43
LIMS1-210ENST00000449684 TMEM260Q9NX78 707 aa17.71■□□□□ 0.43
LIMS1-210ENST00000449684 NID2Q14112 1375 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 ATP2A2P16615 1042 aaKnown RBP17.7■□□□□ 0.42
LIMS1-210ENST00000449684 IFNAR1P17181 557 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 SSRP1Q08945 709 aaKnown RBP17.7■□□□□ 0.42
LIMS1-210ENST00000449684 STK3Q13188 491 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 TOB2Q14106 344 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-210ENST00000449684 CEP55Q53EZ4 464 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 TRIM50Q86XT4 487 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 GLG1Q92896 1179 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 GUCD1Q96NT3 240 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 CDX2Q99626 313 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-210ENST00000449684 TTYH1Q9H313 450 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-210ENST00000449684 KCNH7Q9NS40 1196 aa17.7■□□□□ 0.42
LIMS1-210ENST00000449684 TRIP12Q14669 1992 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-210ENST00000449684 DOCK5Q9H7D0 1870 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 ESYT2A0FGR8 921 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 SREBF1P36956 1147 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 THPOP40225 353 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 PBX2P40425 430 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 KCNJ6P48051 423 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 EVCP57679 992 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 REXO1Q8N1G1 1221 aaKnown RBP17.69■□□□□ 0.42
LIMS1-210ENST00000449684 SLC17A8Q8NDX2 589 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 DHX38Q92620 1227 aaKnown RBP17.69■□□□□ 0.42
LIMS1-210ENST00000449684 ZNF274Q96GC6 653 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-210ENST00000449684 LARP6Q9BRS8 491 aaKnown RBP17.69■□□□□ 0.42
LIMS1-210ENST00000449684 ZMYND12Q9H0C1 365 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 RNPEPQ9H4A4 650 aa17.69■□□□□ 0.42
LIMS1-210ENST00000449684 ZNF576Q9H609 170 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms