RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PLEKHG4Q58EX7 1191 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 TTC22Q5TAA0 569 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 TRAF7Q6Q0C0 670 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.34■□□□□ 0.05
HMGB3-204ENST00000448905 CYFIP1Q7L576 1253 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 FBXO22Q8NEZ5 403 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 GDPD5Q8WTR4 605 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 ZFP91Q96JP5 570 aaPredicted RBP15.34■□□□□ 0.05
HMGB3-204ENST00000448905 INPP4AQ96PE3 977 aaPredicted RBP15.34■□□□□ 0.05
HMGB3-204ENST00000448905 YME1L1Q96TA2 773 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 MAP3K14Q99558 947 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 SENP7Q9BQF6 1050 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 RTEL1Q9NZ71 1219 aa15.34■□□□□ 0.05
HMGB3-204ENST00000448905 SEC63Q9UGP8 760 aaKnown RBP15.34■□□□□ 0.05
HMGB3-204ENST00000448905 TREHO43280 583 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 CHMLP26374 656 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 SPRED2Q7Z698 418 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 IL31RAQ8NI17 732 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 PIBF1Q8WXW3 757 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 APBB2Q92870 758 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 WNT8BQ93098 351 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 TOP1MTQ969P6 601 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 FAM122AQ96E09 287 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 CDHR1Q96JP9 859 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 SETD4Q9NVD3 440 aa15.33■□□□□ 0.04
HMGB3-204ENST00000448905 CYTH3O43739 400 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 MRPS9P82933 396 aaKnown RBP15.32■□□□□ 0.04
HMGB3-204ENST00000448905 HTRA4P83105 476 aaPredicted RBP15.32■□□□□ 0.04
HMGB3-204ENST00000448905 PTH1RQ03431 593 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 MBTPS1Q14703 1052 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 TCTN1Q2MV58 587 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 PUS10Q3MIT2 529 aaKnown RBP15.32■□□□□ 0.04
HMGB3-204ENST00000448905 CASC1Q6TDU7 716 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 NFXL1Q6ZNB6 911 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 RSPH3Q86UC2 560 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 TNPO1Q92973 898 aaKnown RBP15.32■□□□□ 0.04
HMGB3-204ENST00000448905 GPR20Q99678 358 aa15.32■□□□□ 0.04
HMGB3-204ENST00000448905 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.31■□□□□ 0.04
HMGB3-204ENST00000448905 UPP2O95045 317 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 HIC1Q14526 733 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 TMEM31Q5JXX7 168 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 UTP14CQ5TAP6 766 aaKnown RBP15.31■□□□□ 0.04
HMGB3-204ENST00000448905 PCNX4Q63HM2 1172 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 IGDCC4Q8TDY8 1250 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 GPKOWQ92917 476 aaPredicted RBP eCLIP15.31■□□□□ 0.04
HMGB3-204ENST00000448905 MRPL38Q96DV4 380 aaKnown RBP15.31■□□□□ 0.04
HMGB3-204ENST00000448905 MTA3Q9BTC8 594 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 SPZ1Q9BXG8 430 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 UBE2ZQ9H832 354 aaPredicted RBP15.31■□□□□ 0.04
HMGB3-204ENST00000448905 NRCAMQ92823 1304 aa15.31■□□□□ 0.04
HMGB3-204ENST00000448905 TRIP12Q14669 1992 aaPredicted RBP15.31■□□□□ 0.04
HMGB3-204ENST00000448905 CCDC69A6NI79 296 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 PIK3CDO00329 1044 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 CALM1P0DP23 149 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 CALM2P0DP24 149 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 CALM3P0DP25 149 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 GSPT1P15170 499 aaKnown RBP15.3■□□□□ 0.04
HMGB3-204ENST00000448905 HOXC8P31273 242 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 ARHGAP4P98171 946 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 LEXMQ3ZCV2 418 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 EPC2Q52LR7 807 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 TET1Q8NFU7 2136 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 MAP4K1Q92918 833 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 IL17RAQ96F46 866 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 C17orf80Q9BSJ5 609 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 IL25Q9H293 177 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 BCAS3Q9H6U6 928 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 PSTPIP2Q9H939 334 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 FAM50BQ9Y247 325 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 HCN4Q9Y3Q4 1203 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 ARIH1Q9Y4X5 557 aaPredicted RBP15.3■□□□□ 0.04
HMGB3-204ENST00000448905 XIRP2A4UGR9 3374 aa15.3■□□□□ 0.04
HMGB3-204ENST00000448905 H3BNC9 293 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 MAFGO15525 162 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 SGSM2O43147 1006 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 NCK2O43639 380 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 DDAH1O94760 285 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 CTSHP09668 335 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 KCNA5P22460 613 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 MCM5P33992 734 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 SP4Q02446 784 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 GPM6BQ13491 265 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 SLC35G1Q2M3R5 365 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 FAM26DQ5JW98 314 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 TAF2Q6P1X5 1199 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 USP17L6PQ6QN14 398 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 SP7Q8TDD2 431 aaPredicted RBP15.29■□□□□ 0.04
HMGB3-204ENST00000448905 SEPT1Q8WYJ6 367 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 IFIH1Q9BYX4 1025 aaKnown RBP15.29■□□□□ 0.04
HMGB3-204ENST00000448905 EPHX3Q9H6B9 360 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 SENP2Q9HC62 589 aa15.29■□□□□ 0.04
HMGB3-204ENST00000448905 PRRC2BQ5JSZ5 2229 aaKnown RBP15.29■□□□□ 0.04
HMGB3-204ENST00000448905 FRMPD4Q14CM0 1322 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 SCN10AQ9Y5Y9 1956 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 PTPRSQ13332 1948 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 RPLP2P05387 115 aaKnown RBP15.28■□□□□ 0.04
HMGB3-204ENST00000448905 PDE4AP27815 886 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 PLA2G5P39877 138 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 TIGD5Q53EQ6 642 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 SYNE3Q6ZMZ3 975 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms