RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 SETQ01105 290 aaPredicted RBP18.64■□□□□ 0.57
SF3A1-204ENST00000447376 SP4Q02446 784 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 TRIM29Q14134 588 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 MFSD10Q14728 455 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 HABP4Q5JVS0 413 aaKnown RBP18.64■□□□□ 0.57
SF3A1-204ENST00000447376 NIPA1Q7RTP0 329 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 SH3RF1Q7Z6J0 888 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 BLIDQ8IZY5 108 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 TMEM199Q8N511 208 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 CCDC155Q8N6L0 562 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 BADQ92934 168 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 ALG1Q9BT22 464 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 KCNH7Q9NS40 1196 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 PKD2L1Q9P0L9 805 aa18.64■□□□□ 0.57
SF3A1-204ENST00000447376 B4GALT4O60513 344 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 TIMP1P01033 207 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 CD4P01730 458 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 CYP3A4P08684 503 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 PSEN2P49810 448 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 FPGSQ05932 587 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 SEMA3FQ13275 785 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 KIAA0753Q2KHM9 967 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 PLA2G4DQ86XP0 818 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 HIPK3Q9H422 1215 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 TBX21Q9UL17 535 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 GRIN2DO15399 1336 aa18.63■□□□□ 0.57
SF3A1-204ENST00000447376 LARGE1O95461 756 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 F2P00734 622 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 HOXD8P13378 290 aaPredicted RBP18.62■□□□□ 0.57
SF3A1-204ENST00000447376 KCNA2P16389 499 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 TDHQ8IZJ6 230 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 DAGLBQ8NCG7 672 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 RASGRP4Q8TDF6 673 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 GPR20Q99678 358 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 LLPHQ9BRT6 129 aaKnown RBP18.62■□□□□ 0.57
SF3A1-204ENST00000447376 PPP1R12CQ9BZL4 782 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 TRPV6Q9H1D0 765 aa18.62■□□□□ 0.57
SF3A1-204ENST00000447376 JPH1Q9HDC5 661 aaPredicted RBP18.62■□□□□ 0.57
SF3A1-204ENST00000447376 NFASCO94856 1347 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 CCDC194A0A1B0GVG4 234 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 H3BRB1 525 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 MEIS1O00470 390 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 LGALS2P05162 132 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 PPIGQ13427 754 aaKnown RBP eCLIP18.61■□□□□ 0.577e-8■□□□□ 9.3
SF3A1-204ENST00000447376 BFSP2Q13515 415 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 NONOQ15233 471 aaKnown RBP eCLIP18.61■□□□□ 0.57
SF3A1-204ENST00000447376 UTP14CQ5TAP6 766 aaKnown RBP18.61■□□□□ 0.57
SF3A1-204ENST00000447376 MFSD5Q6N075 450 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 KRT25Q7Z3Z0 450 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 SEPT1Q8WYJ6 367 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 TNPO1Q92973 898 aaKnown RBP18.61■□□□□ 0.57
SF3A1-204ENST00000447376 TUT1Q9H6E5 874 aaKnown RBP18.61■□□□□ 0.57
SF3A1-204ENST00000447376 AZI2Q9H6S1 392 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 TRMT13Q9NUP7 481 aaKnown RBP18.61■□□□□ 0.57
SF3A1-204ENST00000447376 SLC9A2Q9UBY0 812 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 SCN10AQ9Y5Y9 1956 aa18.61■□□□□ 0.57
SF3A1-204ENST00000447376 ATP9AO75110 1047 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 GNAT1P11488 350 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 TCF7P36402 384 aaPredicted RBP18.6■□□□□ 0.57
SF3A1-204ENST00000447376 USP11P51784 963 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 PTGISQ16647 500 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 SESTD1Q86VW0 696 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 CCDC83Q8IWF9 413 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 RETREG2Q8NC44 543 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 KAT2BQ92831 832 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 AIFM3Q96NN9 605 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 LTBP2Q14767 1821 aa18.6■□□□□ 0.57
SF3A1-204ENST00000447376 PRR16Q569H4 304 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 NSUN7Q8NE18 718 aaKnown RBP18.59■□□□□ 0.57
SF3A1-204ENST00000447376 CYP2W1Q8TAV3 490 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 TBCKQ8TEA7 893 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 GLG1Q92896 1179 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 ZNF577Q9BSK1 485 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 PHF20Q9BVI0 1012 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 PRO3102Q9H379 93 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 AGO4Q9HCK5 861 aaKnown RBP18.59■□□□□ 0.57
SF3A1-204ENST00000447376 TBC1D22BQ9NU19 505 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 HDAC6Q9UBN7 1215 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 GTF2IRD1Q9UHL9 959 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 KCNJ14Q9UNX9 436 aa18.59■□□□□ 0.57
SF3A1-204ENST00000447376 C17orf102A2RUQ5 167 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 HAS3O00219 553 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 IPO5O00410 1097 aaKnown RBP18.58■□□□□ 0.56
SF3A1-204ENST00000447376 CTDNEP1O95476 244 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 ARP10275 920 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 HMGN5P82970 282 aaKnown RBP18.58■□□□□ 0.56
SF3A1-204ENST00000447376 FAM184AQ8NB25 1140 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 NAP1L4Q99733 375 aaKnown RBP18.58■□□□□ 0.56
SF3A1-204ENST00000447376 C16orf70Q9BSU1 422 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 SMARCAD1Q9H4L7 1026 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 BCAS3Q9H6U6 928 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 ERAP1Q9NZ08 941 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 KIF3AQ9Y496 699 aa18.58■□□□□ 0.56
SF3A1-204ENST00000447376 FAM86B1E9PN63 330 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 FAM86B2P0C5J1 330 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 CYP2C9P11712 490 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 CIITAP33076 1130 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 CYP2C18P33260 490 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 KRT2P35908 639 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 SAFBQ15424 915 aaKnown RBP eCLIP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms