RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 UTP14CQ5TAP6 766 aaKnown RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 CYFIP1Q7L576 1253 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 FBXO22Q8NEZ5 403 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 MAF1Q9H063 256 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 TUT1Q9H6E5 874 aaKnown RBP9.4□□□□□ -0.9
VIM-202ENST00000421459 CNNM2Q9H8M5 875 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 CTNNA3Q9UI47 895 aa9.4□□□□□ -0.9
VIM-202ENST00000421459 MYO9BQ13459 2157 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 H3BQ06 376 aaPredicted RBP9.39□□□□□ -0.91
VIM-202ENST00000421459 IFIT3O14879 490 aaKnown RBP9.39□□□□□ -0.91
VIM-202ENST00000421459 CSPG5O95196 566 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 PARNO95453 639 aaKnown RBP9.39□□□□□ -0.91
VIM-202ENST00000421459 AMHP03971 560 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 CYP21A2P08686 494 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 HTRA4P83105 476 aaPredicted RBP9.39□□□□□ -0.91
VIM-202ENST00000421459 EPC2Q52LR7 807 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 TMEM31Q5JXX7 168 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 USP17L6PQ6QN14 398 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 ZBTB10Q96DT7 871 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 MYL10Q9BUA6 226 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 RIOX1Q9H6W3 641 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 LMCD1Q9NZU5 365 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 INSL6Q9Y581 213 aa9.39□□□□□ -0.91
VIM-202ENST00000421459 TRIP12Q14669 1992 aaPredicted RBP9.38□□□□□ -0.91
VIM-202ENST00000421459 PNMA6FA0A0J9YX94 578 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 SPATA31C2B4DYI2 1134 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 HIP1O00291 1037 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 EFCAB14O75071 495 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 HOXC8P31273 242 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 ANTXR2P58335 489 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 TROAPQ12815 778 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 LEXMQ3ZCV2 418 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 TCEAL5Q5H9L2 206 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 PTCRAQ6ISU1 281 aaPredicted RBP9.38□□□□□ -0.91
VIM-202ENST00000421459 KCNV1Q6PIU1 500 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 RUFY4Q6ZNE9 571 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 EP400NLQ6ZTU2 488 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 FAM178BQ8IXR5 827 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 SP7Q8TDD2 431 aaPredicted RBP9.38□□□□□ -0.91
VIM-202ENST00000421459 TOP1MTQ969P6 601 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 YME1L1Q96TA2 773 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 GPR20Q99678 358 aa9.38□□□□□ -0.91
VIM-202ENST00000421459 C5orf42Q9H799 3197 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 EMSYQ7Z589 1322 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 GRXCR2A6NFK2 248 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 E7EWF7 191 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 PI4K2BG5E9Z4 385 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 NOP56O00567 594 aaKnown RBP9.37□□□□□ -0.91
VIM-202ENST00000421459 GPR37L1O60883 481 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 ATP9AO75110 1047 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 CHRNA1P02708 482 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 TGFB3P10600 412 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 SSTR3P32745 418 aaPredicted RBP9.37□□□□□ -0.91
VIM-202ENST00000421459 ARHGAP4P98171 946 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 GPM6BQ13491 265 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 WTAPQ15007 396 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 RAB11FIP4Q86YS3 637 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 TMEM192Q8IY95 271 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 GJD3Q8N144 294 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 CMTR1Q8N1G2 835 aaKnown RBP9.37□□□□□ -0.91
VIM-202ENST00000421459 SEPT8Q92599 483 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 INPP4AQ96PE3 977 aaPredicted RBP9.37□□□□□ -0.91
VIM-202ENST00000421459 IFIH1Q9BYX4 1025 aaKnown RBP9.37□□□□□ -0.91
VIM-202ENST00000421459 MAP3K20Q9NYL2 800 aaKnown RBP9.37□□□□□ -0.91
VIM-202ENST00000421459 PKD2L1Q9P0L9 805 aa9.37□□□□□ -0.91
VIM-202ENST00000421459 WDFY4Q6ZS81 3184 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 hCG_1642624A0A1W2PR95 340 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 H3BNC9 293 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 MEIS2O14770 477 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 PLEKHA8P1O95397 391 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 GHRP10912 638 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 RXRAP19793 462 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 CHMLP26374 656 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 MARK3P27448 753 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 HOXD11P31277 338 aaPredicted RBP9.36□□□□□ -0.91
VIM-202ENST00000421459 ICAM3P32942 547 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 GTF2F1P35269 517 aaKnown RBP eCLIP9.36□□□□□ -0.91
VIM-202ENST00000421459 NT5C2P49902 561 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 ADAM17P78536 824 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 TRDNQ13061 729 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 CLUL1Q15846 466 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 TTC22Q5TAA0 569 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 METTL7BQ6UX53 244 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 BANK1Q8NDB2 785 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 NEK9Q8TD19 979 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 IGDCC4Q8TDY8 1250 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 LMBR1Q8WVP7 490 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 MRPL38Q96DV4 380 aaKnown RBP9.36□□□□□ -0.91
VIM-202ENST00000421459 USP26Q9BXU7 913 aa9.36□□□□□ -0.91
VIM-202ENST00000421459 LAMA4Q16363 1823 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 FRMPD4Q14CM0 1322 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 KIAA1217Q5T5P2 1943 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 GSTTP1A0A1W2PQM5 241 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 GRM6O15303 877 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 FIBPO43427 364 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 LINC00271P0C7V0 271 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 DLX2Q07687 328 aaPredicted RBP9.35□□□□□ -0.91
VIM-202ENST00000421459 NEDD9Q14511 834 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 UBE2SQ16763 222 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 GNPTABQ3T906 1256 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms